HitPredict is a resource of experimentally determined protein-protein interactions with reliability scores.
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Protein-protein interactions from IntAct, BioGRID, MINT, DIP, MatrixDB, InnateDB are combined, annotated and scored. The reliability score is calculated based on the experimental details of each interaction and the sequence, structure and functional annotations of the interacting proteins.
HitPredict update (18Jul2023) contains:
- 1275391 experimentally identified physical protein-protein interactions
- 112090 proteins
- 124 species
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News
18th July 2023: Latest update of HitPredict is available.
26th August 2022: Latest update of HitPredict is available. Interactions from HPRD are no longer included in HitPredict.
30th August 2021: Latest update of HitPredict is available.
3rd August 2020: Latest update of HitPredict is available.
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References
Yosvany Lopez, Kenta Nakai and Ashwini Patil; HitPredict version 4 - comprehensive reliability scoring of physical protein-protein interactions from more than 100 species, Database 2015:bav117, 2015
Ashwini Patil, Kenta Nakai and Haruki Nakamura; HitPredict: a database of quality-assessed protein-protein interactions in nine species, Nucl. Acids Res. 2011 Database Issue:D744-9
Ashwini Patil and Haruki Nakamura; Filtering high-throughput protein-protein interaction data using a combination of genomic features, BMC Bioinformatics, 2005, 6:100 |
CONTACT: ashwini_at_combinatics_dot_com |
Previous versions
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Last updated: 18Jul2023
Service provided by Combinatics
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