Protein: DDX28
Probable ATP-dependent RNA helicase DDX28 (EC 3.6.4.13) (Mitochondrial DEAD box protein 28)

Gene: DDX28
Organism: Homo sapiens
Interactions: 206
UniProt ID: Q9NUL7

Gene Ontology (top 5):
GO:0003723 - RNA binding
GO:0003724 - RNA helicase activity
GO:0005524 - ATP binding
GO:0005654 - nucleoplasm
GO:0005730 - nucleolus

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1316568

RM04
Large ribosomal subunit protein uL4m

4

2

High-throughput

0.694

High

1304472

MPP8
M-phase phosphoprotein 8

1

4

High-throughput

0.691

High

327580

TRUB2
Pseudouridylate synthase TRUB2, mitochondrial

3

2

High-throughput

0.667

High

1286867

RUSD4
Pseudouridylate synthase RPUSD4, mitochondrial

3

1

High-throughput

0.667

High

175242

OGT1
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

1

12

High-throughput

0.647

High

1289145

MTEF3
Transcription termination factor 3, mitochondrial

3

0

High-throughput

0.638

High

1346030

FAKD2
FAST kinase domain-containing protein 2, mitochondrial

3

0

High-throughput

0.638

High

254752

PTCD1
Pentatricopeptide repeat-containing protein 1, mitochondrial

2

1

High-throughput

0.628

High

304366

UBR5
E3 ubiquitin-protein ligase UBR5

2

12

High-throughput

0.628

High

841014

MAP2
Methionine aminopeptidase 2

2

2

High-throughput

0.628

High

1217822

FABD
Malonyl-CoA-acyl carrier protein transacylase, mitochondrial

2

1

High-throughput

0.628

High

1344397

4ET
Eukaryotic translation initiation factor 4E transporter

1

1

High-throughput

0.621

High

295303

RECQ4
ATP-dependent DNA helicase Q4

1

17

High-throughput

0.618

High

300834

GLSK
Glutaminase kidney isoform, mitochondrial

1

4

High-throughput

0.618

High

328970

TOP3B
DNA topoisomerase 3-beta-1

1

2

High-throughput

0.618

High

1272374

RENT1
Regulator of nonsense transcripts 1

1

6

High-throughput

0.618

High

856830

RM12
Large ribosomal subunit protein bL12m

2

1

High-throughput

0.611

High

1133964

RM02
Large ribosomal subunit protein uL2m

2

4

High-throughput

0.611

High

1289708

MASU1
Mitochondrial assembly of ribosomal large subunit protein 1

2

0

High-throughput

0.602

High

1342667

NGRN
Neugrin

2

0

High-throughput

0.602

High

1346050

SYYM
Tyrosine--tRNA ligase, mitochondrial

2

0

High-throughput

0.602

High

1334552

LN28A
Protein lin-28 homolog A

2

18

High-throughput

0.601

High

1222941

SUV3
ATP-dependent RNA helicase SUPV3L1, mitochondrial

1

0

High-throughput

0.586

High

1253416

RM30
Large ribosomal subunit protein uL30m

2

0

High-throughput

0.585

High

1335723

MRM3
rRNA methyltransferase 3, mitochondrial

2

0

High-throughput

0.585

High

1342478

RT30
Large ribosomal subunit protein mL65

2

0

High-throughput

0.585

High

453649

ROA1
Heterogeneous nuclear ribonucleoprotein A1

2

15

Small-scale

0.584

High

225059

ZNRD2
Protein ZNRD2

2

1

High-throughput

0.574

High

370531

ESR1
Estrogen receptor

2

20

High-throughput

0.571

High

925660

RAC1
Ras-related C3 botulinum toxin substrate 1

2

6

High-throughput

0.571

High

931442

YBOX1
Y-box-binding protein 1

2

18

Small-scale

0.571

High

1069871

PTPRR
Receptor-type tyrosine-protein phosphatase R

2

3

High-throughput

0.571

High

1171921

TRI67
Tripartite motif-containing protein 67

1

14

High-throughput

0.553

High

1346041

HECD1
E3 ubiquitin-protein ligase HECTD1

1

15

High-throughput

0.553

High

47880

RBM47
RNA-binding protein 47

1

5

High-throughput

0.536

High

124093

SPT5H
Transcription elongation factor SPT5

1

8

High-throughput

0.536

High

316178

CBX6
Chromobox protein homolog 6

1

3

High-throughput

0.536

High

737508

LONM
Lon protease homolog, mitochondrial

1

3

High-throughput

0.536

High

794146

MATR3
Matrin-3

1

8

High-throughput

0.536

High

952148

SRSF3
Serine/arginine-rich splicing factor 3

1

18

High-throughput

0.536

High

986856

PSME1
Proteasome activator complex subunit 1

1

1

High-throughput

0.536

High

1042643

CUL3
Cullin-3

1

17

High-throughput

0.536

High

1073873

RBMS2
RNA-binding motif, single-stranded-interacting protein 2

1

7

High-throughput

0.536

High

1084429

SRSF7
Serine/arginine-rich splicing factor 7

1

16

High-throughput

0.536

High

1219049

HSC20
Iron-sulfur cluster co-chaperone protein HscB

1

5

High-throughput

0.536

High

1273582

UBP13
Ubiquitin carboxyl-terminal hydrolase 13

1

8

High-throughput

0.536

High

1316459

RM13
Large ribosomal subunit protein uL13m

1

3

High-throughput

0.536

High

1346031

F120A
Constitutive coactivator of PPAR-gamma-like protein 1

1

2

High-throughput

0.536

High

1346040

PNMA2
Paraneoplastic antigen Ma2

1

3

High-throughput

0.536

High

1346042

ABT1
Activator of basal transcription 1

1

4

High-throughput

0.536

High

1346049

YBOX2
Y-box-binding protein 2

1

18

High-throughput

0.536

High

486334

CCL3
C-C motif chemokine 3

1

0

High-throughput

0.513

High

945363

PRR3
Proline-rich protein 3

1

0

High-throughput

0.513

High

1051111

ICT1
Large ribosomal subunit protein mL62

1

0

High-throughput

0.513

High

1073167

SF3B3
Splicing factor 3B subunit 3

1

0

High-throughput

0.513

High

1176097

H1FNT
Testis-specific H1 histone

1

0

High-throughput

0.513

High

1232972

D2HDH
D-2-hydroxyglutarate dehydrogenase, mitochondrial

1

0

High-throughput

0.513

High

1291212

NEIL1
Endonuclease 8-like 1

1

0

High-throughput

0.513

High

1328183

RM18
Large ribosomal subunit protein uL18m

1

0

High-throughput

0.513

High

1346035

KLH14
Kelch-like protein 14

1

0

High-throughput

0.513

High

476450

UBC
Polyubiquitin-C [Cleaved into: Ubiquitin]

1

6

High-throughput

0.501

High

296487

ACL6B
Actin-like protein 6B

1

6

High-throughput

0.489

High

975745

LMNB2
Lamin-B2

1

14

High-throughput

0.489

High

1016035

SCAP
Sterol regulatory element-binding protein cleavage-activating protein

1

14

High-throughput

0.489

High

1062685

EMC2
ER membrane protein complex subunit 2

1

7

High-throughput

0.489

High

1221477

ZC3H3
Zinc finger CCCH domain-containing protein 3

1

3

High-throughput

0.489

High

1285079

ARRD3
Arrestin domain-containing protein 3

1

3

High-throughput

0.489

High

59327

VWA8
von Willebrand factor A domain-containing protein 8

1

2

High-throughput

0.479

High

135704

NDKM
Nucleoside diphosphate kinase, mitochondrial

1

1

High-throughput

0.479

High

149345

CTRO
Citron Rho-interacting kinase

1

11

High-throughput

0.479

High

162171

HNRDL
Heterogeneous nuclear ribonucleoprotein D-like

1

15

High-throughput

0.479

High

173126

RT12
Small ribosomal subunit protein uS12m

1

2

High-throughput

0.479

High

241096

RT14
Small ribosomal subunit protein uS14m

1

1

High-throughput

0.479

High

265057

MPPB
Mitochondrial-processing peptidase subunit beta

1

1

High-throughput

0.479

High

271651

ERAL1
GTPase Era, mitochondrial

1

3

High-throughput

0.479

High

309098

KI20A
Kinesin-like protein KIF20A

1

14

High-throughput

0.479

High

348016

MYC
Myc proto-oncogene protein

1

13

High-throughput

0.479

High

374956

RAF1
RAF proto-oncogene serine/threonine-protein kinase

1

7

High-throughput

0.479

High

379924

MYCN
N-myc proto-oncogene protein

1

13

High-throughput

0.479

High

385592

NTRK1
High affinity nerve growth factor receptor

1

7

High-throughput

0.479

High

440760

ODPA
Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial

1

2

High-throughput

0.479

High

541175

HNRPL
Heterogeneous nuclear ribonucleoprotein L

1

10

High-throughput

0.479

High

649773

RL10
Large ribosomal subunit protein uL16

1

4

High-throughput

0.479

High

658178

NDUS1
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

1

2

High-throughput

0.479

High

671531

ECHM
Enoyl-CoA hydratase, mitochondrial

1

2

High-throughput

0.479

High

687295

P5CR1
Pyrroline-5-carboxylate reductase 1, mitochondrial

1

2

High-throughput

0.479

High

713631

GLYM
Serine hydroxymethyltransferase, mitochondrial

1

2

High-throughput

0.479

High

738073

PP1G
Serine/threonine-protein phosphatase PP1-gamma catalytic subunit

1

5

High-throughput

0.479

High

739312

ODO2
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial

1

1

High-throughput

0.479

High

777762

MDHM
Malate dehydrogenase, mitochondrial

1

1

High-throughput

0.479

High

803250

IF2M
Translation initiation factor IF-2, mitochondrial

1

3

High-throughput

0.479

High

818509

SOX2
Transcription factor SOX-2

1

12

High-throughput

0.479

High

947677

RT05
Small ribosomal subunit protein uS5m

1

7

High-throughput

0.479

High

948728

RT09
Small ribosomal subunit protein uS9m

1

5

High-throughput

0.479

High

967985

PO5F1
POU domain, class 5, transcription factor 1

1

3

High-throughput

0.479

High

969548

ODO1
2-oxoglutarate dehydrogenase complex component E1

1

3

High-throughput

0.479

High

990347

C1QBP
Complement component 1 Q subcomponent-binding protein, mitochondrial

1

1

High-throughput

0.479

High

1018083

GRSF1
G-rich sequence factor 1

1

20

High-throughput

0.479

High

1045882

AUHM
Methylglutaconyl-CoA hydratase, mitochondrial

1

2

High-throughput

0.479

High

1064184

TNIP1
TNFAIP3-interacting protein 1

1

20

High-throughput

0.479

High

1066763

KIF14
Kinesin-like protein KIF14

1

6

High-throughput

0.479

High

1085983

IF16
Gamma-interferon-inducible protein 16

1

5

High-throughput

0.479

High

1128269

SYAM
Alanine--tRNA ligase, mitochondrial

1

1

High-throughput

0.479

High

1136315

RC3H1
Roquin-1

1

7

High-throughput

0.479

High

1173933

UBP30
Ubiquitin carboxyl-terminal hydrolase 30

1

19

High-throughput

0.479

High

1183710

TM10C
tRNA methyltransferase 10 homolog C

1

1

High-throughput

0.479

High

1187952

RM21
Large ribosomal subunit protein bL21m

1

1

High-throughput

0.479

High

1232845

GUF1
Translation factor GUF1, mitochondrial

1

2

High-throughput

0.479

High

1238206

RM43
Large ribosomal subunit protein mL43

1

1

High-throughput

0.479

High

1241026

SERB1
SERPINE1 mRNA-binding protein 1

1

1

High-throughput

0.479

High

1253776

PNPT1
Polyribonucleotide nucleotidyltransferase 1, mitochondrial

1

3

High-throughput

0.479

High

1283390

RM24
Large ribosomal subunit protein uL24m

1

1

High-throughput

0.479

High

1285200

SH3K1
SH3 domain-containing kinase-binding protein 1

1

5

High-throughput

0.479

High

1286368

P5CR2
Pyrroline-5-carboxylate reductase 2

1

2

High-throughput

0.479

High

1294051

DDRGK
DDRGK domain-containing protein 1

1

7

High-throughput

0.479

High

1310520

RIOK1
Serine/threonine-protein kinase RIO1

1

10

High-throughput

0.479

High

1316419

RM20
Large ribosomal subunit protein bL20m

1

1

High-throughput

0.479

High

1316906

MK67I
MKI67 FHA domain-interacting nucleolar phosphoprotein

1

14

High-throughput

0.479

High

1326529

SLIRP
SRA stem-loop-interacting RNA-binding protein, mitochondrial

1

10

High-throughput

0.479

High

1331137

MTG2
Mitochondrial ribosome-associated GTPase 2

1

5

High-throughput

0.479

High

1332997

TDRD3
Tudor domain-containing protein 3

1

2

High-throughput

0.479

High

1333755

ECT2
Protein ECT2

1

4

High-throughput

0.479

High

1334313

RM44
Large ribosomal subunit protein mL44

1

4

High-throughput

0.479

High

1335192

RC3H2
Roquin-2

1

11

High-throughput

0.479

High

1335982

MOV10
Helicase MOV-10

1

6

High-throughput

0.479

High

1343673

ANLN
Anillin

1

5

High-throughput

0.479

High

1346032

RM15
Large ribosomal subunit protein uL15m

1

1

High-throughput

0.479

High

1346033

RM27
Large ribosomal subunit protein bL27m

1

1

High-throughput

0.479

High

1346034

UBP36
Ubiquitin carboxyl-terminal hydrolase 36

1

9

High-throughput

0.479

High

1346036

ZRAN1
Ubiquitin thioesterase ZRANB1

1

10

High-throughput

0.479

High

1346048

RT07
Small ribosomal subunit protein uS7m

1

2

High-throughput

0.479

High

1346051

RT02
Small ribosomal subunit protein uS2m

1

9

High-throughput

0.479

High

1346052

RM11
Large ribosomal subunit protein uL11m

1

1

High-throughput

0.479

High

1346053

RT16
Small ribosomal subunit protein bS16m

1

2

High-throughput

0.479

High

1274255

RBPMS
RNA-binding protein with multiple splicing

1

0

High-throughput

0.460

High

63465

MET15
12S rRNA N4-methylcytidine

1

0

High-throughput

0.458

High

72667

B4DEF8
Large ribosomal subunit protein mL45

1

0

High-throughput

0.458

High

121381

NDUS8
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

1

0

High-throughput

0.458

High

127587

RPOM
DNA-directed RNA polymerase, mitochondrial

1

0

High-throughput

0.458

High

197553

NDUS4
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

1

0

High-throughput

0.458

High

208673

TIM44
Mitochondrial import inner membrane translocase subunit TIM44

1

0

High-throughput

0.458

High

259163

NDUS2
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

1

0

High-throughput

0.458

High

262995

CISY
Citrate synthase, mitochondrial

1

0

High-throughput

0.458

High

266832

NDUS3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

1

0

High-throughput

0.458

High

306722

NDUA7
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

1

0

High-throughput

0.458

High

307459

LETM1
Mitochondrial proton/calcium exchanger protein

1

0

High-throughput

0.458

High

584085

NDUV2
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

1

0

High-throughput

0.458

High

623386

AT5F1
ATP synthase F(0) complex subunit B1, mitochondrial

1

0

High-throughput

0.458

High

790028

LPPRC
Leucine-rich PPR motif-containing protein, mitochondrial

1

0

High-throughput

0.458

High

829341

SYHM
Histidine--tRNA ligase, mitochondrial

1

0

High-throughput

0.458

High

835259

NDUV1
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

1

0

High-throughput

0.458

High

846246

RT29
Small ribosomal subunit protein mS29

1

0

High-throughput

0.458

High

879958

NDUV3
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

1

0

High-throughput

0.458

High

946984

RT22
Small ribosomal subunit protein mS22

1

0

High-throughput

0.458

High

947162

RT25
Small ribosomal subunit protein mS25

1

0

High-throughput

0.458

High

947500

RT35
Small ribosomal subunit protein mS35

1

0

High-throughput

0.458

High

948371

RT34
Small ribosomal subunit protein mS34

1

0

High-throughput

0.458

High

948514

RT06
Small ribosomal subunit protein bS6m

1

0

High-throughput

0.458

High

1023973

RM28
Large ribosomal subunit protein bL28m

1

0

High-throughput

0.458

High

1033240

RM49
Large ribosomal subunit protein mL49

1

0

High-throughput

0.458

High

1087725

NDUA9
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

1

0

High-throughput

0.458

High

1136096

ATPF1
ATP synthase mitochondrial F1 complex assembly factor 1

1

0

High-throughput

0.458

High

1235029

RM50
Large ribosomal subunit protein mL50

1

0

High-throughput

0.458

High

1266975

RT27
Small ribosomal subunit protein mS27

1

0

High-throughput

0.458

High

1268802

RT31
Small ribosomal subunit protein mS31

1

0

High-throughput

0.458

High

1289009

RRFM
Ribosome-recycling factor, mitochondrial

1

0

High-throughput

0.458

High

1289897

RT24
Small ribosomal subunit protein uS3m

1

0

High-throughput

0.458

High

1290645

PTCD3
Small ribosomal subunit protein mS39

1

0

High-throughput

0.458

High

1290713

MMAB
Corrinoid adenosyltransferase MMAB

1

0

High-throughput

0.458

High

1292085

RM48
Large ribosomal subunit protein mL48

1

0

High-throughput

0.458

High

1308554

NIPS1
Protein NipSnap homolog 1

1

0

High-throughput

0.458

High

1311192

TACO1
Translational activator of cytochrome c oxidase 1

1

0

High-throughput

0.458

High

1315035

HINT2
Adenosine 5'-monophosphoramidase HINT2

1

0

High-throughput

0.458

High

1317145

RT26
Small ribosomal subunit protein mS26

1

0

High-throughput

0.458

High

1317851

RM37
Large ribosomal subunit protein mL37

1

0

High-throughput

0.458

High

1329744

RM46
Large ribosomal subunit protein mL46

1

0

High-throughput

0.458

High

1333103

MET17
Ribosome assembly protein METTL17, mitochondrial

1

0

High-throughput

0.458

High

1333372

ACAD9
Complex I assembly factor ACAD9, mitochondrial

1

0

High-throughput

0.458

High

1334651

SYCM
Probable cysteine--tRNA ligase, mitochondrial

1

0

High-throughput

0.458

High

1346029

RT18A
Large ribosomal subunit protein mL66

1

0

High-throughput

0.458

High

1346037

NDUAC
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

1

0

High-throughput

0.458

High

1346038

ATIF1
ATPase inhibitor, mitochondrial

1

0

High-throughput

0.458

High

1346045

RT33
Small ribosomal subunit protein mS33

1

0

High-throughput

0.458

High

1346047

RT28
Small ribosomal subunit protein bS1m

1

0

High-throughput

0.458

High

1346054

RT23
Small ribosomal subunit protein mS23

1

0

High-throughput

0.458

High

1346055

AFG32
Mitochondrial inner membrane m-AAA protease component AFG3L2

1

0

High-throughput

0.458

High

1346056

RT18B
Small ribosomal subunit protein mS40

1

0

High-throughput

0.458

High

1346057

NFS1
Cysteine desulfurase

1

0

High-throughput

0.458

High

1346058

RM42
Large ribosomal subunit protein mL42

1

0

High-throughput

0.458

High

1346028

ATD3A
ATPase family AAA domain-containing protein 3A

1

5

High-throughput

0.445

High

72867

B4DJ38
cDNA FLJ56092, highly similar to Pentatricopeptide repeat protein 1

1

1

High-throughput

0.437

High

210805

NDUA2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

1

1

High-throughput

0.437

High

1288100

OTUB2
Ubiquitin thioesterase OTUB2

1

2

Small-scale

0.437

High

1331409

PKHA4
Pleckstrin homology domain-containing family A member 4

1

15

High-throughput

0.437

High

659321

DUS1
Dual specificity protein phosphatase 1

2

0

High-throughput

0.298

High

557417

BGAL
Beta-galactosidase

1

0

High-throughput

0.279

Low

875910

MFAP4
Microfibril-associated glycoprotein 4

1

0

High-throughput

0.279

Low

957491

IDD
Integral membrane protein DGCR2/IDD

1

0

High-throughput

0.279

Low

1346039

DKKL1
Dickkopf-like protein 1

1

0

High-throughput

0.279

Low

1346043

EPDR1
Mammalian ependymin-related protein 1

1

0

High-throughput

0.279

Low

1346044

CLC11
C-type lectin domain family 11 member A

1

0

High-throughput

0.279

Low

1346046

MA2B2
Epididymis-specific alpha-mannosidase

1

0

High-throughput

0.279

Low

258811

NDUS7
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

1

0

High-throughput

0.249

Low

261910

NDUS6
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

1

0

High-throughput

0.249

Low

881449

NDUA6
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

1

0

High-throughput

0.249

Low

1086503

NDUA5
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

1

0

High-throughput

0.249

Low


Service provided by Combinatics, Japan

Last updated: 15 Jul 2024