Protein: RNE
Ribonuclease E (RNase E) (EC 3.1.26.12)

Gene: RNE
Organism: Escherichia coli K-12
Interactions: 66
UniProt ID: P21513

Gene Ontology (top 5):
GO:0000049 - tRNA binding
GO:0000287 - magnesium ion binding
GO:0000967 - rRNA 5'-end processing
GO:0003723 - RNA binding
GO:0004521 - RNA endonuclease activity

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

393749

PNP
Polyribonucleotide nucleotidyltransferase

7

0

Small-scale

0.907

High

599044

RNR
Ribonuclease R

2

0

High-throughput

0.748

High

599092

RNE
Ribonuclease E

2

0

Small-scale

0.738

High

461302

RS10
Small ribosomal subunit protein uS10

2

0

High-throughput

0.720

High

599103

RL24
Large ribosomal subunit protein uL24

2

0

High-throughput

0.720

High

463535

RHLB
ATP-dependent RNA helicase RhlB

5

3

Small-scale

0.718

High

461828

RS2
Small ribosomal subunit protein uS2

1

1

High-throughput

0.691

High

458646

ENO
Enolase

4

1

Small-scale

0.674

High

357084

RS7
Small ribosomal subunit protein uS7

1

0

High-throughput

0.656

High

465154

DEAD
ATP-dependent RNA helicase DeaD

3

1

Small-scale

0.634

High

459189

DNAK
Chaperone protein DnaK

2

1

Small-scale

0.612

High

599076

SRMB
ATP-dependent RNA helicase SrmB

3

3

High-throughput

0.611

High

474155

EFTU1
Elongation factor Tu 1

2

1

High-throughput

0.611

High

460799

RL1
Large ribosomal subunit protein uL1

3

0

Small-scale

0.607

High

461684

RS20
Small ribosomal subunit protein bS20

2

1

High-throughput

0.588

High

469651

YFIF
Uncharacterized tRNA/rRNA methyltransferase YfiF

2

1

High-throughput

0.588

High

356958

RS6
Small ribosomal subunit protein bS6

2

0

High-throughput

0.585

High

599101

RL2
Large ribosomal subunit protein uL2

2

1

Small-scale

0.570

High

460488

RL11
Large ribosomal subunit protein uL11

2

0

High-throughput

0.563

High

460569

RL7
Large ribosomal subunit protein bL12

2

0

High-throughput

0.563

High

461544

RS16
Small ribosomal subunit protein bS16

2

0

High-throughput

0.563

High

465558

RL13
Large ribosomal subunit protein uL13

2

0

High-throughput

0.563

High

466042

YBCJ
Putative RNA-binding protein YbcJ

2

0

High-throughput

0.563

High

469286

RL21
Large ribosomal subunit protein bL21

2

0

High-throughput

0.563

High

461214

RL9
Large ribosomal subunit protein bL9

2

0

Small-scale

0.545

High

599093

TRMA
tRNA/tmRNA

1

0

High-throughput

0.537

High

599099

RLUB
Ribosomal large subunit pseudouridine synthase B

1

0

High-throughput

0.537

High

462352

RS5
Small ribosomal subunit protein uS5

1

1

High-throughput

0.536

High

599096

RLMN
Dual-specificity RNA methyltransferase RlmN

1

0

High-throughput

0.513

High

599102

RL3
Large ribosomal subunit protein uL3

1

0

High-throughput

0.513

High

599108

RLMKL
Ribosomal RNA large subunit methyltransferase K/L [Includes: 23S rRNA m2G2445 methyltransferase

1

0

High-throughput

0.513

High

474220

EFTU2
Elongation factor Tu 2

1

1

High-throughput

0.500

High

458944

HFQ
RNA-binding protein Hfq

1

1

High-throughput

0.484

High

461982

RS3
Small ribosomal subunit protein uS3

1

1

High-throughput

0.484

High

462169

RS4
Small ribosomal subunit protein uS4

1

1

High-throughput

0.484

High

599106

RS21
Small ribosomal subunit protein bS21

1

1

High-throughput

0.484

High

458727

FABZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ

1

0

High-throughput

0.464

High

467979

RL23
Large ribosomal subunit protein uL23

1

0

High-throughput

0.464

High

599104

RL4
Large ribosomal subunit protein uL4

1

0

High-throughput

0.464

High

599105

RL22
Large ribosomal subunit protein uL22

1

0

High-throughput

0.464

High

404185

APAH
Bis(5'-nucleosyl)-tetraphosphatase [symmetrical]

1

0

High-throughput

0.458

High

599107

CSRA
Carbon storage regulator

1

0

High-throughput

0.458

High

468589

MIND
Septum site-determining protein MinD

1

0

Small-scale

0.438

High

358401

RL15
Large ribosomal subunit protein uL15

1

0

Small-scale

0.426

High

460998

RL28
Large ribosomal subunit protein bL28

1

0

Small-scale

0.426

High

466356

PCNB
Poly(A) polymerase I

1

0

Small-scale

0.426

High

599097

DPPF
Dipeptide transport ATP-binding protein DppF

1

0

Small-scale

0.426

High

599109

BLUF
Blue light- and temperature-regulated antirepressor BluF

1

1

Small-scale

0.407

High

599110

PDEG
Probable cyclic di-GMP phosphodiesterase PdeG

1

1

Small-scale

0.407

High

460052

PGK
Phosphoglycerate kinase

2

0

High-throughput

0.307

High

392845

ILVA
L-threonine dehydratase biosynthetic IlvA

1

0

High-throughput

0.279

Low

467579

YECA
Uncharacterized protein YecA

1

0

High-throughput

0.279

Low

549317

PUR9
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase

1

0

High-throughput

0.279

Low

599112

LYSAC
Peptidyl-lysine N-acetyltransferase PatZ

1

0

High-throughput

0.279

Low

467415

CRA
Catabolite repressor/activator

1

0

High-throughput

0.253

Low

599100

YJJU
Uncharacterized protein YjjU

1

0

High-throughput

0.249

Low

599111

YNCE
Uncharacterized protein YncE

1

0

High-throughput

0.249

Low

599113

GTRB
Prophage bactoprenol glucosyl transferase homolog

1

0

High-throughput

0.249

Low

599116

MENI
1,4-dihydroxy-2-naphthoyl-CoA hydrolase

1

0

High-throughput

0.249

Low

466136

YCEB
Uncharacterized lipoprotein YceB

1

0

Small-scale

0.232

Low

599094

KCH
Voltage-gated potassium channel Kch

1

0

Small-scale

0.232

Low

599095

TKT2
Transketolase 2

1

0

Small-scale

0.232

Low

599098

YHJC
Uncharacterized HTH-type transcriptional regulator YhjC

1

0

Small-scale

0.232

Low

599114

MSCK
Mechanosensitive channel MscK

1

0

Small-scale

0.232

Low

599115

SFMD
Outer membrane usher protein SfmD

1

0

Small-scale

0.232

Low


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Last updated: 15 Jul 2024