Protein: RUXF
Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF)

Gene: RUXF, SMX3
Organism: Saccharomyces cerevisiae S288C
Interactions: 95
UniProt ID: P54999

Gene Ontology (top 5):
GO:0000243 - commitment complex
GO:0000245 - spliceosomal complex assembly
GO:0000387 - spliceosomal snRNP assembly
GO:0000395 - mRNA 5'-splice site recognition
GO:0000398 - mRNA splicing, via spliceosome

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

873680

RUXE
Small nuclear ribonucleoprotein E

6

8

Small-scale

0.950

High

873667

SMD2
Small nuclear ribonucleoprotein Sm D2

6

6

High-throughput

0.947

High

766936

RSMB
Small nuclear ribonucleoprotein-associated protein B

5

5

High-throughput

0.912

High

795402

SMD3
Small nuclear ribonucleoprotein Sm D3

5

19

Small-scale

0.912

High

873676

RU2A
U2 small nuclear ribonucleoprotein A'

5

4

High-throughput

0.912

High

873673

LUC7
Protein LUC7

4

2

High-throughput

0.875

High

586508

PRP9
Pre-mRNA-splicing factor PRP9

3

1

High-throughput

0.830

High

704698

PRP8
Pre-mRNA-splicing factor 8

3

2

High-throughput

0.830

High

731752

SN114
Pre-mRNA-splicing factor SNU114

3

3

High-throughput

0.830

High

873653

RU17
U1 small nuclear ribonucleoprotein 70 kDa homolog

2

6

High-throughput

0.776

High

873654

SMD1
Small nuclear ribonucleoprotein Sm D1

2

2

High-throughput

0.776

High

873657

PRP3
U4/U6 small nuclear ribonucleoprotein PRP3

2

3

High-throughput

0.776

High

697240

BRR2
Pre-mRNA-splicing helicase BRR2

6

8

Small-scale

0.717

High

873650

RUXF
Small nuclear ribonucleoprotein F

1

4

Small-scale

0.710

High

692335

PRP19
Pre-mRNA-processing factor 19

5

6

Small-scale

0.706

High

873677

CWC2
Pre-mRNA-splicing factor CWC2

4

4

High-throughput

0.687

High

873659

CEF1
Pre-mRNA-splicing factor CEF1

4

2

Small-scale

0.686

High

586431

PRP6
Pre-mRNA-splicing factor 6

4

9

High-throughput

0.683

High

589090

PRP4
U4/U6 small nuclear ribonucleoprotein PRP4

4

6

High-throughput

0.683

High

703253

PRP40
Pre-mRNA-processing protein PRP40

4

4

High-throughput

0.683

High

763240

PRP39
Pre-mRNA-processing factor 39

4

12

High-throughput

0.683

High

830818

PRP31
Pre-mRNA-processing factor 31

4

3

High-throughput

0.683

High

710195

NCBP1
Nuclear cap-binding protein complex subunit 1

4

1

High-throughput

0.678

High

873655

CUS1
Cold sensitive U2 snRNA suppressor 1

4

1

High-throughput

0.678

High

873666

SN309
Pre-mRNA-splicing factor SNT309

4

0

High-throughput

0.658

High

860148

SNU71
U1 small nuclear ribonucleoprotein component SNU71

4

0

High-throughput

0.654

High

873651

NAM8
Protein NAM8

3

1

High-throughput

0.650

High

746867

SLT11
Pre-mRNA-splicing factor SLT11

3

1

High-throughput

0.643

High

775717

MSL1
U2 small nuclear ribonucleoprotein B''

3

7

High-throughput

0.643

High

836920

SF3B1
U2 snRNP component HSH155

3

2

High-throughput

0.643

High

873661

PRP42
U1 small nuclear ribonucleoprotein component PRP42

3

15

High-throughput

0.643

High

873664

RSE1
Pre-mRNA-splicing factor RSE1

3

2

High-throughput

0.643

High

873670

DIB1
Spliceosomal protein DIB1

3

2

High-throughput

0.643

High

873682

PRP46
Pre-mRNA-splicing factor PRP46

3

3

High-throughput

0.643

High

696655

RU1A
U1 small nuclear ribonucleoprotein A

3

0

Small-scale

0.632

High

873685

BRR1
Pre-mRNA-splicing factor BRR1

1

0

High-throughput

0.631

High

873669

SP382
Pre-mRNA-splicing factor SPP382

3

0

High-throughput

0.629

High

746330

LSM2
U6 snRNA-associated Sm-like protein LSm2

1

19

High-throughput

0.618

High

767814

LSM4
U6 snRNA-associated Sm-like protein LSm4

1

8

High-throughput

0.618

High

770320

RUXG
Small nuclear ribonucleoprotein G

1

20

High-throughput

0.618

High

811658

LSM8
U6 snRNA-associated Sm-like protein LSm8

1

20

High-throughput

0.618

High

865976

LSM7
U6 snRNA-associated Sm-like protein LSm7

1

20

High-throughput

0.618

High

589443

PRP2
Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2

2

6

High-throughput

0.601

High

859403

PRP43
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

2

5

High-throughput

0.588

High

873665

RU1C
U1 small nuclear ribonucleoprotein C

1

0

High-throughput

0.586

High

873658

CWC21
Pre-mRNA-splicing factor CWC21

2

1

Small-scale

0.584

High

873679

CLF1
Pre-mRNA-splicing factor CLF1

2

12

Small-scale

0.584

High

873683

SNU66
66 kDa U4/U6.U5 small nuclear ribonucleoprotein component

2

3

Small-scale

0.584

High

873662

SNU56
56 kDa U1 small nuclear ribonucleoprotein component

2

0

High-throughput

0.576

High

812243

CSN12
Cop9 signalosome complex subunit 12

2

0

High-throughput

0.563

High

512340

SSB1
Ribosome-associated molecular chaperone SSB1

2

2

High-throughput

0.552

High

688724

AAR2
A1 cistron-splicing factor AAR2

1

1

High-throughput

0.515

High

622331

PRP22
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22

1

6

Small-scale

0.501

High

873668

BL1S4
Biogenesis of lysosome-related organelles complex 1 subunit CNL1

1

0

High-throughput

0.486

High

873684

CMR1
DNA damage-binding protein CMR1

1

2

High-throughput

0.481

High

598638

ISY1
Pre-mRNA-splicing factor ISY1

1

1

High-throughput

0.479

High

629386

BUD31
Pre-mRNA-splicing factor BUD31

1

1

High-throughput

0.479

High

655737

PRP45
Pre-mRNA-processing protein 45

1

1

High-throughput

0.479

High

692415

PRP21
Pre-mRNA-splicing factor PRP21

1

2

High-throughput

0.479

High

694182

PUB1
Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

1

4

High-throughput

0.479

High

778626

PRP17
Pre-mRNA-processing factor 17

1

4

High-throughput

0.479

High

873663

SYF1
Pre-mRNA-splicing factor SYF1

1

12

High-throughput

0.479

High

873672

PRP11
Pre-mRNA-splicing factor PRP11

1

1

High-throughput

0.479

High

873675

NCBP2
Nuclear cap-binding protein subunit 2

1

2

High-throughput

0.479

High

873678

YRA1
RNA annealing protein YRA1

1

4

High-throughput

0.479

High

873686

HSH49
Protein HSH49

1

2

High-throughput

0.479

High

566216

EST1
Telomere elongation protein EST1

1

0

High-throughput

0.458

High

657756

YJU2
Splicing factor YJU2

1

0

High-throughput

0.458

High

733087

NTR2
Pre-mRNA-splicing factor NTR2

1

0

High-throughput

0.458

High

747717

SP381
Pre-mRNA-splicing factor SPP381

1

0

High-throughput

0.458

High

748079

NTC20
Pre-mRNA-splicing factor NTC20

1

0

High-throughput

0.458

High

809541

CWC26
Pre-mRNA-splicing factor CWC26

1

0

High-throughput

0.458

High

861066

SYF2
Pre-mRNA-splicing factor SYF2

1

0

High-throughput

0.458

High

861570

CWC22
Pre-mRNA-splicing factor CWC22

1

0

High-throughput

0.458

High

866401

APJ1
J domain-containing protein APJ1

1

0

High-throughput

0.458

High

873652

PRP38
Pre-mRNA-splicing factor 38

1

0

High-throughput

0.458

High

873656

TOM1
E3 ubiquitin-protein ligase TOM1

1

0

High-throughput

0.458

High

873660

CWC15
Pre-mRNA-splicing factor CWC15

1

0

High-throughput

0.458

High

873671

RDS3
Pre-mRNA-splicing factor RDS3

1

0

High-throughput

0.458

High

873681

SNU23
23 kDa U4/U6.U5 small nuclear ribonucleoprotein component

1

0

High-throughput

0.458

High

450147

HSP73
Heat shock protein SSA3

1

2

High-throughput

0.445

High

499034

RL4A
Large ribosomal subunit protein uL4A

1

1

High-throughput

0.445

High

705520

HSP78
Heat shock protein 78, mitochondrial

1

1

High-throughput

0.445

High

629755

STE50
Protein STE50

1

0

High-throughput

0.438

High

864719

ESF2
Pre-rRNA-processing protein ESF2

1

0

High-throughput

0.438

High

762457

LAA1
AP-1 accessory protein LAA1

1

1

High-throughput

0.437

High

376892

PABP
Polyadenylate-binding protein, cytoplasmic and nuclear

1

0

High-throughput

0.426

High

399589

RLA0
Large ribosomal subunit protein uL10

1

0

High-throughput

0.426

High

405252

RL17A
Large ribosomal subunit protein uL22A

1

0

High-throughput

0.426

High

775642

DJP1
DnaJ-like protein 1

1

1

High-throughput

0.407

High

758688

TEM1
Protein TEM1

1

0

High-throughput

0.265

Low

777345

HACD
Very-long-chain

1

0

High-throughput

0.238

Low

810466

MRX5
MIOREX complex component 5

1

0

High-throughput

0.238

Low

873674

YO106
Putative uncharacterized protein YOL106W

1

0

High-throughput

0.238

Low


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Last updated: 15 Jul 2024