Protein: LSM7
U6 snRNA-associated Sm-like protein LSm7

Gene: LSM7
Organism: Saccharomyces cerevisiae S288C
Interactions: 79
UniProt ID: P53905

Gene Ontology (top 5):
GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000398 - mRNA splicing, via spliceosome
GO:0000932 - P-body
GO:0000956 - nuclear-transcribed mRNA catabolic process
GO:0003723 - RNA binding

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

635902

PAT1
Deadenylation-dependent mRNA-decapping factor PAT1

10

7

Small-scale

0.975

High

810527

LSM1
Sm-like protein LSm1

10

20

Small-scale

0.974

High

865977

LSM3
U6 snRNA-associated Sm-like protein LSm3

8

20

Small-scale

0.968

High

746327

LSM2
U6 snRNA-associated Sm-like protein LSm2

7

20

Small-scale

0.967

High

767810

LSM4
U6 snRNA-associated Sm-like protein LSm4

6

20

Small-scale

0.955

High

811655

LSM8
U6 snRNA-associated Sm-like protein LSm8

6

20

Small-scale

0.942

High

768241

LSM5
U6 snRNA-associated Sm-like protein LSm5

6

14

Small-scale

0.934

High

865982

LSM6
U6 snRNA-associated Sm-like protein LSm6

5

20

Small-scale

0.928

High

837113

PRP24
U4/U6 snRNA-associated-splicing factor PRP24

5

9

Small-scale

0.925

High

731750

SN114
Pre-mRNA-splicing factor SNU114

3

14

High-throughput

0.861

High

865981

SMD2
Small nuclear ribonucleoprotein Sm D2

3

12

High-throughput

0.861

High

704696

PRP8
Pre-mRNA-splicing factor 8

2

9

High-throughput

0.789

High

762002

DHH1
ATP-dependent RNA helicase DHH1

6

8

High-throughput

0.730

High

697239

BRR2
Pre-mRNA-splicing helicase BRR2

6

20

Small-scale

0.724

High

589089

PRP4
U4/U6 small nuclear ribonucleoprotein PRP4

4

15

High-throughput

0.697

High

605109

XRN1
5'-3' exoribonuclease 1

4

3

High-throughput

0.691

High

586429

PRP6
Pre-mRNA-splicing factor 6

3

20

High-throughput

0.662

High

865992

SNU66
66 kDa U4/U6.U5 small nuclear ribonucleoprotein component

3

9

Small-scale

0.662

High

865985

DIB1
Spliceosomal protein DIB1

2

7

High-throughput

0.621

High

865991

SNU23
23 kDa U4/U6.U5 small nuclear ribonucleoprotein component

2

3

High-throughput

0.621

High

766934

RSMB
Small nuclear ribonucleoprotein-associated protein B

1

13

High-throughput

0.618

High

865976

RUXF
Small nuclear ribonucleoprotein F

1

20

High-throughput

0.618

High

865979

PRP3
U4/U6 small nuclear ribonucleoprotein PRP3

1

10

High-throughput

0.618

High

865987

RU2A
U2 small nuclear ribonucleoprotein A'

1

10

High-throughput

0.618

High

830817

PRP31
Pre-mRNA-processing factor 31

2

9

High-throughput

0.601

High

424896

IF4E
Eukaryotic translation initiation factor 4E

2

3

High-throughput

0.588

High

512270

SSB1
Ribosome-associated molecular chaperone SSB1

2

5

High-throughput

0.552

High

865994

DCP1
mRNA-decapping enzyme subunit 1

1

2

Small-scale

0.515

High

774402

HOS4
Protein HOS4

1

1

High-throughput

0.508

High

865986

VAM6
Vacuolar morphogenesis protein 6

1

3

High-throughput

0.508

High

752173

KSP1
Serine/threonine-protein kinase KSP1

1

1

High-throughput

0.501

High

796957

YFG6
Y' element ATP-dependent helicase YFL066C

1

0

High-throughput

0.486

High

408428

RS31
Ubiquitin-ribosomal protein eS31 fusion protein [Cleaved into: Ubiquitin; Small ribosomal subunit protein eS31

1

1

High-throughput

0.479

High

544201

HSC82
ATP-dependent molecular chaperone HSC82

1

2

High-throughput

0.479

High

662972

TF2B
Transcription initiation factor IIB

1

2

High-throughput

0.479

High

675764

RENT1
ATP-dependent helicase NAM7

1

7

Small-scale

0.479

High

680908

HS104
Heat shock protein 104

1

3

High-throughput

0.479

High

696883

RML2
Large ribosomal subunit protein uL2m

1

2

High-throughput

0.479

High

735289

RM07
Large ribosomal subunit protein uL5m

1

2

High-throughput

0.479

High

865980

RM01
Large ribosomal subunit protein uL1m

1

2

High-throughput

0.479

High

865983

MHR1
Large ribosomal subunit protein mL67

1

2

High-throughput

0.479

High

865988

SCC1
Sister chromatid cohesion protein 1

1

1

High-throughput

0.479

High

865990

CLF1
Pre-mRNA-splicing factor CLF1

1

20

Small-scale

0.479

High

494647

HSP72
Heat shock protein SSA2

1

6

High-throughput

0.445

High

633457

MAS5
Mitochondrial protein import protein MAS5

1

2

High-throughput

0.445

High

692332

PRP19
Pre-mRNA-processing factor 19

1

15

Small-scale

0.445

High

695253

HSP7F
Heat shock protein homolog SSE1

1

8

High-throughput

0.445

High

754610

SSZ1
Ribosome-associated complex subunit SSZ1

1

1

High-throughput

0.445

High

520544

RM02
Large ribosomal subunit protein bL27m

1

2

High-throughput

0.437

High

534497

RM31
Large ribosomal subunit protein mL60

1

2

High-throughput

0.437

High

589393

RM33
Large ribosomal subunit protein uL30m

1

2

High-throughput

0.437

High

607434

RM08
Large ribosomal subunit protein bL17m

1

2

High-throughput

0.437

High

607500

RM20
Large ribosomal subunit protein mL58

1

2

High-throughput

0.437

High

615621

RM25
Large ribosomal subunit protein mL59

1

2

High-throughput

0.437

High

635386

IMG1
Large ribosomal subunit protein bL19m

1

2

High-throughput

0.437

High

635793

IMG2
Large ribosomal subunit protein mL49

1

2

High-throughput

0.437

High

679577

RM09
Large ribosomal subunit protein uL3m

1

3

High-throughput

0.437

High

689532

RM41
Large ribosomal subunit protein uL23m

1

2

High-throughput

0.437

High

729813

RM38
Large ribosomal subunit protein uL14m

1

2

High-throughput

0.437

High

735159

RM03
Large ribosomal subunit protein mL44

1

2

High-throughput

0.437

High

735230

RM04
Large ribosomal subunit protein uL29m

1

1

High-throughput

0.437

High

735354

RM10
Large ribosomal subunit protein uL15m

1

2

High-throughput

0.437

High

735526

RM24
Large ribosomal subunit protein bL28m

1

2

High-throughput

0.437

High

735570

RM27
Large ribosomal subunit protein mL41

1

2

High-throughput

0.437

High

735621

RM28
Large ribosomal subunit protein mL40

1

2

High-throughput

0.437

High

735684

RM17
Large ribosomal subunit protein mL46

1

2

High-throughput

0.437

High

735801

RM39
Large ribosomal subunit protein bL33m

1

2

High-throughput

0.437

High

735838

RM40
Large ribosomal subunit protein uL24m

1

2

High-throughput

0.437

High

743369

RM16
Large ribosomal subunit protein uL16m

1

2

High-throughput

0.437

High

777366

RN49
Large ribosomal subunit protein bL21m

1

2

High-throughput

0.437

High

852251

RL4P
Large ribosomal subunit protein uL4m

1

2

High-throughput

0.437

High

860338

EIF2A
Eukaryotic translation initiation factor 2A

1

3

High-throughput

0.437

High

864408

RM50
Large ribosomal subunit protein bL9m

1

2

High-throughput

0.437

High

865705

RM22
Large ribosomal subunit protein uL22m

1

2

High-throughput

0.437

High

865978

RM13
Large ribosomal subunit protein mL50

1

2

High-throughput

0.437

High

865984

RM35
Large ribosomal subunit protein mL38

1

2

High-throughput

0.437

High

865993

RM23
Large ribosomal subunit protein uL13m

1

3

High-throughput

0.437

High

697843

MG101
Mitochondrial genome maintenance protein MGM101

1

0

Small-scale

0.249

Low

865989

POM33
Pore membrane protein of 33 kDa

1

0

Small-scale

0.249

Low


Service provided by Combinatics, Japan

Last updated: 15 Jul 2024