HitPredict

Interactor 1: NRPE1 (Q5D869)
DNA-directed RNA polymerase V subunit 1 (DNA-directed RNA polymerase D subunit 1b) (AtNRPD1b) (Nuclear RNA polymerase D 1b) (DNA-directed RNA polymerase E subunit 1) (Nuclear RNA polymerase E 1) (EC 2.7.7.6) (Protein DEFECTIVE IN MERISTEM SILENCING 5) (Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3) (Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1) (RNA polymerase IV subunit 1) (POL IV 1)
Gene: NRPE1

Interactor 2: RPB9B (Q8L5V0)
DNA-directed RNA polymerases II, IV and V subunit 9B
Gene: NRPB9B

Species: Arabidopsis thaliana

Source: biogrid

Category: Small-scale

Confidence: High

Method score Annotation score Interaction score
0.38 1.00 0.618

The method score is based on:

Property Details
Experiments 25561521
Identification Methods affinity chromatography technology
Interaction Type physical association

The annotation score is based on:

Property Details
Interacting Pfam domains RNA_pol_Rpb1_2~TFIIS_C, RNA_pol_Rpb1_3~TFIIS_C, RNA_POL_M_15KD~RNA_pol_Rpb1_5, RNA_pol_Rpb1_5~TFIIS_C
Common GO terms GO:0000418 - RNA polymerase IV complex
GO:0000419 - RNA polymerase V complex
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity
GO:0005665 - RNA polymerase II, core complex
GO:0005730 - nucleolus
Homologous interactions 16

Homologous interactions

Color coding for hit scores

1 1976
At

1 114
+ At
+ Hs
+ Bt
+ Hs
+ Hs
+ Sc
+ Sc
+ Hs
+ At
+ At
+ Sp
+ Sc
+ Hs
+ Hs
+ Dm
+ Sc

Service provided by Combinatics, Japan

Last updated: 15 Jul 2024