HitPredict

Interactor 1: LSM1B (Q8LFL8)
Sm-like protein LSM1B (AtLSM1b)
Gene: LSM1B

Interactor 2: LSM6A (Q9M1Z3)
Sm-like protein LSM6A (AtLSM6A) (U6 snRNA-associated Sm-like protein LSM6A)
Gene: LSM6A

Species: Arabidopsis thaliana

Source: intact

Category: High-throughput

Confidence: High

Method score	Annotation score	Interaction score
0.48	1.00	0.698

Property	Details
Experiments	21798944
Identification Methods	two hybrid, two hybrid array
Interaction Type	direct interaction, physical association

Property	Details
Interacting Pfam domains	LSM~LSM
Common GO terms	GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000932 - P-body GO:0003723 - RNA binding GO:1990726 - Lsm1-7-Pat1 complex
Homologous interactions	20

Homologous interactions (Top 20)

Color coding for hit scores

	1 128 At			1 91
+	Hs
		167728 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		LSM4_HUMAN (15-90): 5.13e-34: 115: 24.68
+	At
		1340905 LSM7_ARATH (15-94): 5.55e-26: 95.1: 34.12		LSM6A_ARATH (1-91): 2.24e-35: 117: 100.00
+	Hs
		167678 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		RUXF_HUMAN (10-83): 1.46e-31: 107: 45.95
+	At
		1323924 LSM5_ARATH (3-87): 1.48e-25: 93.9: 22.35		LSM6A_ARATH (1-91): 2.24e-35: 117: 100.00
+	Hs
		928049 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		LSM4_HUMAN (15-90): 5.13e-34: 115: 24.68
+	Hs
		167681 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		LSM6_HUMAN (13-87): 1.11e-30: 105: 84.00
+	Hs
		911801 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		RUXF_HUMAN (10-83): 1.46e-31: 107: 45.95
+	Hs
		912220 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		LSM6_HUMAN (13-87): 1.11e-30: 105: 84.00
+	Hs
		538890 RSMB_HUMAN (8-89): 1.02e-23: 93.1: 25.00		RUXF_HUMAN (10-83): 1.46e-31: 107: 45.95
+	Hs
		538893 RSMB_HUMAN (8-89): 1.02e-23: 93.1: 25.00		LSM6_HUMAN (13-87): 1.11e-30: 105: 84.00
+	Sc
		767790 LSM1_YEAST (12-127): 5.31e-32: 112: 37.90		LSM4_YEAST (15-90): 3.52e-21: 83.8: 20.69
+	Sc
		810539 LSM1_YEAST (12-127): 5.31e-32: 112: 37.90		LSM6_YEAST (1-84): 3.68e-21: 81.2: 37.50
+	Hs
		167726 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		LSM2_HUMAN (17-89): 1.33e-21: 82.3: 28.95
+	Hs
		167682 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		SMD1_HUMAN (16-84): 3.77e-21: 81.9: 24.64
+	Hs
		912611 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		SMD3_HUMAN (13-84): 8.59e-23: 86.5: 22.22
+	Dm
		1374114 Q9W2K2_DROME (7-126): 4.08e-26: 96.6: 44.00		Q9VTW6_DROME (17-89): 1.28e-21: 82.7: 28.95
+	Hs
		928046 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		LSM2_HUMAN (17-89): 1.33e-21: 82.3: 28.95
+	Hs
		912265 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		SMD1_HUMAN (16-84): 3.77e-21: 81.9: 24.64
+	Sc
		746307 LSM1_YEAST (12-127): 5.31e-32: 112: 37.90		LSM2_YEAST (17-89): 2.1e-11: 56.6: 25.00
+	Sc
		810530 LSM1_YEAST (12-127): 5.31e-32: 112: 37.90		LSM3_YEAST (13-88): 6.77e-11: 55.1: 27.71