HitPredict

Interactor 1: LSM1B (Q8LFL8)
Sm-like protein LSM1B (AtLSM1b)
Gene: LSM1B

Interactor 2: LSM7 (Q9SI54)
Sm-like protein LSM7 (AtLSM7) (Protein EMBRYO DEFECTIVE 2816) (U6 snRNA-associated Sm-like protein LSM7)
Gene: LSM7

Species: Arabidopsis thaliana

Source: intact

Category: High-throughput

Confidence: High

Method score	Annotation score	Interaction score
0.48	1.00	0.698

Property	Details
Experiments	21798944
Identification Methods	two hybrid, two hybrid array
Interaction Type	direct interaction, physical association

Property	Details
Interacting Pfam domains	LSM~LSM
Common GO terms	GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000932 - P-body GO:0003723 - RNA binding GO:0005829 - cytosol GO:1990726 - Lsm1-7-Pat1 complex
Homologous interactions	19

Homologous interactions

Color coding for hit scores

	1 128 At			1 99
+	Hs
		167725 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		LSM7_HUMAN (4-97): 2.18e-32: 110: 55.32
+	Sc
		810514 LSM1_YEAST (12-127): 5.31e-32: 112: 37.90		LSM1_YEAST (7-99): 7.71e-23: 88: 24.73
+	Ce
		186307 O18694_CAEEL (2-88): 2.38e-25: 93.5: 18.39		Q23543_CAEEL (4-97): 1.32e-30: 105: 56.38
+	Sc
		810527 LSM1_YEAST (12-127): 5.31e-32: 112: 37.90		LSM7_YEAST (3-87): 1.49e-22: 85.7: 46.59
+	Dm
		1368680 Q9W2K2_DROME (7-126): 4.08e-26: 96.6: 44.00		Q9VJI7_DROME (4-96): 2.15e-28: 100: 58.51
+	Sc
		810530 LSM1_YEAST (12-127): 5.31e-32: 112: 37.90		LSM3_YEAST (6-90): 6.59e-22: 83.4: 34.88
+	Hs
		167663 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		RSMB_HUMAN (3-92): 3.15e-23: 90.7: 23.91
+	Hs
		167679 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		RUXG_HUMAN (3-86): 6.14e-23: 85.7: 34.52
+	Sc
		768230 LSM1_YEAST (12-127): 5.31e-32: 112: 37.90		LSM5_YEAST (1-82): 1.34e-19: 77.6: 26.51
+	Hs
		538899 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		RSMB_HUMAN (3-92): 3.15e-23: 90.7: 23.91
+	Hs
		167680 LSM1_HUMAN (7-123): 2.31e-29: 104: 46.15		LSM3_HUMAN (2-83): 1.48e-20: 80.3: 29.55
+	Hs
		538826 RSMB_HUMAN (8-89): 1.02e-23: 93.1: 25.00		RSMB_HUMAN (3-92): 3.15e-23: 90.7: 23.91
+	Mm
		912216 LSM1_MOUSE (7-123): 8.73e-29: 103: 45.30		LSM3_MOUSE (2-83): 1.48e-20: 80.3: 29.55
+	Hs
		912026 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		RUXG_HUMAN (3-86): 6.14e-23: 85.7: 34.52
+	Hs
		68412 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		RUXGL_HUMAN (3-86): 3.05e-21: 81.4: 33.33
+	Hs
		321392 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		LSM8_HUMAN (11-90): 6.63e-21: 81: 33.75
+	Hs
		68400 RSMB_HUMAN (8-89): 1.02e-23: 93.1: 25.00		RUXGL_HUMAN (3-86): 3.05e-21: 81.4: 33.33
+	Hs
		321370 RSMB_HUMAN (8-89): 1.02e-23: 93.1: 25.00		LSM8_HUMAN (11-90): 6.63e-21: 81: 33.75
+	Mm
		912214 LSM8_MOUSE (11-89): 3.33e-25: 93.1: 38.75		LSM3_MOUSE (2-83): 1.48e-20: 80.3: 29.55