HitPredict

Interactor 1: RUXF (Q9SUM2)
Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF)
Gene: At4g30220

Interactor 2: RUXF (Q9SUM2)
Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF)
Gene: At4g30220

Species: Arabidopsis thaliana

Source: intact

Category: High-throughput

Confidence: High

Method score	Annotation score	Interaction score
0.48	1.00	0.698

Property	Details
Experiments	21798944
Identification Methods	two hybrid, two hybrid array
Interaction Type	direct interaction, physical association

Property	Details
Interacting Pfam domains	LSM~LSM
Common GO terms	GO:0000387 - spliceosomal snRNP assembly GO:0000398 - mRNA splicing, via spliceosome GO:0003723 - RNA binding GO:0005685 - U1 snRNP GO:0034715 - pICln-Sm protein complex and 1 others more... GO:0071013 - catalytic step 2 spliceosome
Homologous interactions	17

Homologous interactions

Color coding for hit scores

	1 88 At			1 88
+	Zm
		38861 A0A1D6MPT6_MAIZE (6-86): 3.39e-39: 129: 28.05		A0A1D6MPT6_MAIZE (6-86): 3.39e-39: 129: 28.05
+	Hs
		912008 LSM4_HUMAN (6-86): 2.87e-37: 123: 26.83		RUXF_HUMAN (3-76): 6.93e-35: 115: 78.38
+	Hs
		912260 LSM4_HUMAN (6-86): 2.87e-37: 123: 26.83		LSM6_HUMAN (1-80): 4.9e-34: 113: 42.50
+	Hs
		911792 RUXF_HUMAN (3-76): 6.93e-35: 115: 78.38		LSM6_HUMAN (1-80): 4.9e-34: 113: 42.50
+	Dm
		1369699 Q9VKW8_DROME (6-86): 4.02e-38: 126: 32.14		Q9W2P5_DROME (10-80): 1.94e-29: 101: 45.07
+	Sp
		145524 LSM4_SCHPO (6-87): 1.45e-32: 110: 33.74		LSM4_SCHPO (6-87): 1.45e-32: 110: 33.74
+	Dm
		1369696 Q9VKW8_DROME (6-86): 4.02e-38: 126: 32.14		Q9VTW6_DROME (10-83): 3.72e-24: 88.9: 28.57
+	Hs
		1377523 LSM4_HUMAN (6-86): 2.87e-37: 123: 26.83		LSM2_HUMAN (10-83): 2.26e-23: 86.9: 28.57
+	Hs
		912765 LSM4_HUMAN (6-86): 2.87e-37: 123: 26.83		SMD3_HUMAN (8-77): 2.3e-22: 85: 21.43
+	Sc
		873650 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		RUXF_YEAST (2-78): 1.15e-29: 102: 56.41
+	Hs
		912002 RUXF_HUMAN (3-76): 6.93e-35: 115: 78.38		LSM2_HUMAN (10-83): 2.26e-23: 86.9: 28.57
+	Hs
		911795 RUXF_HUMAN (3-76): 6.93e-35: 115: 78.38		SMD3_HUMAN (8-77): 2.3e-22: 85: 21.43
+	Hs
		912257 LSM6_HUMAN (1-80): 4.9e-34: 113: 42.50		LSM2_HUMAN (10-83): 2.26e-23: 86.9: 28.57
+	Dm
		218361 RUXF_DROME (2-84): 9.87e-35: 115: 69.88		SMD3_DROME (8-77): 2.89e-20: 80.4: 21.43
+	Sc
		795402 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		SMD3_YEAST (8-77): 2.98e-25: 91.9: 22.86
+	Sc
		767814 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		LSM4_YEAST (6-86): 6.04e-22: 85.8: 25.00
+	Sc
		746330 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		LSM2_YEAST (10-73): 4.02e-09: 50.4: 38.81