HitPredict

Interactor 1: RUXF (Q9SUM2)
Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF)
Gene: At4g30220

Interactor 2: Q9ZV45 (Q9ZV45)
Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)
Gene: PCP

Species: Arabidopsis thaliana

Source: intact

Category: High-throughput

Confidence: High

Method score	Annotation score	Interaction score
0.48	1.00	0.698

Property	Details
Experiments	21798944
Identification Methods	two hybrid, two hybrid array
Interaction Type	direct interaction, physical association

Property	Details
Interacting Pfam domains	LSM~LSM
Common GO terms	GO:0000387 - spliceosomal snRNP assembly GO:0003723 - RNA binding GO:0005685 - U1 snRNP GO:0034715 - pICln-Sm protein complex
Homologous interactions	15

Homologous interactions

Color coding for hit scores

	1 88 At			1 88
+	At
		1227147 RUXF_ARATH (1-88): 2.98e-39: 126: 100.00		Q8LAK5_ARATH (1-88): 1.28e-44: 140: 97.73
+	Hs
		911779 LSM4_HUMAN (6-86): 2.87e-37: 123: 26.83		RUXE_HUMAN (5-85): 1.82e-41: 132: 67.90
+	At
		1227145 LSM6A_ARATH (1-76): 4.57e-33: 111: 42.11		Q8LAK5_ARATH (1-88): 1.28e-44: 140: 97.73
+	At
		1340906 LSM6A_ARATH (1-76): 4.57e-33: 111: 42.11		Q9ZV45_ARATH (1-88): 1.54e-44: 140: 100.00
+	Hs
		911605 RUXF_HUMAN (3-76): 6.93e-35: 115: 78.38		RUXE_HUMAN (5-85): 1.82e-41: 132: 67.90
+	Dm
		1097029 RUXF_DROME (2-84): 9.87e-35: 115: 69.88		RUXE_DROME (5-85): 6.12e-41: 131: 67.90
+	Hs
		911608 LSM6_HUMAN (1-80): 4.9e-34: 113: 42.50		RUXE_HUMAN (5-85): 1.82e-41: 132: 67.90
+	Ce
		712471 RUXF_CAEEL (2-82): 8.67e-34: 112: 74.07		RUXE_CAEEL (1-86): 2.31e-40: 129: 56.98
+	Hs
		911773 LSM2_HUMAN (10-83): 2.26e-23: 86.9: 28.57		RUXE_HUMAN (5-85): 1.82e-41: 132: 67.90
+	Hs
		911611 SMD3_HUMAN (8-77): 2.3e-22: 85: 21.43		RUXE_HUMAN (5-85): 1.82e-41: 132: 67.90
+	Sc
		873680 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		RUXE_YEAST (3-86): 6.92e-34: 113: 52.17
+	Dm
		218372 SMD3_DROME (8-77): 2.89e-20: 80.4: 21.43		RUXE_DROME (5-85): 6.12e-41: 131: 67.90
+	Sc
		795435 SMD3_YEAST (8-77): 2.98e-25: 91.9: 22.86		RUXE_YEAST (3-86): 6.92e-34: 113: 52.17
+	Sc
		746366 LSM2_YEAST (10-73): 4.02e-09: 50.4: 38.81		RUXE_YEAST (3-86): 6.92e-34: 113: 52.17
+	Sc
		884839 LSM3_YEAST (7-81): 4.62e-09: 50.4: 24.39		RUXE_YEAST (3-86): 6.92e-34: 113: 52.17