HitPredict

Interactor 1: O18694 (O18694)
U6 snRNA-associated Sm-like protein LSm5
Gene: lsm-5

Interactor 2: Q23543 (Q23543)
Sm domain-containing protein
Gene: lsm-7

Species: Caenorhabditis elegans

Source: intact

Category: Small-scale

Confidence: High

Method score Annotation score Interaction score
0.63 1.00 0.800

The method score is based on:

Property Details
Experiments 19123269, 11731503
Identification Methods two hybrid, two hybrid array, two hybrid pooling approach
Interaction Type direct interaction, physical association

The annotation score is based on:

Property Details
Interacting Pfam domains LSM~LSM
Common GO terms GO:0000398 - mRNA splicing, via spliceosome
GO:0003723 - RNA binding
GO:0005688 - U6 snRNP
GO:0005737 - cytoplasm
GO:1990726 - Lsm1-7-Pat1 complex
Homologous interactions 20

Homologous interactions (Top 20)

Color coding for hit scores

1 91
Ce

1 104
+ Hs
+ Mm
+ Dm
+ Hs
+ Hs
+ At
+ Hs
+ Sp
+ Hs
+ Hs
+ Hs
+ Dm
+ Dm
+ Hs
+ Hs
+ Hs
+ Hs
+ Hs
+ Hs
+ Hs

Service provided by Combinatics, Japan

Last updated: 15 Jul 2024