HitPredict

Interactor 1: LSM2 (P38203)
U6 snRNA-associated Sm-like protein LSm2 (Small nuclear ribonucleoprotein D homolog SNP3)
Gene: LSM2

Interactor 2: LSM5 (P40089)
U6 snRNA-associated Sm-like protein LSm5
Gene: LSM5

Species: Saccharomyces cerevisiae S288C

Source: mint

Category: Small-scale

Confidence: High

Method score	Annotation score	Interaction score
0.93	1.00	0.965

The method score is based on:

Property	Details
Experiments	10428970, 10688190, 10900456, 11805826, 37968396, 20108977, 16429126
Identification Methods	two hybrid, tandem affinity purification, affinity chromatography technology
Interaction Type	physical association, direct interaction, association

The annotation score is based on:

Property	Details
Interacting Pfam domains	LSM~LSM
Common GO terms	GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000398 - mRNA splicing, via spliceosome GO:0000932 - P-body GO:0003723 - RNA binding GO:0005634 - nucleus and 9 others more... GO:0005681 - spliceosomal complex GO:0005688 - U6 snRNP GO:0005730 - nucleolus GO:0005732 - sno(s)RNA-containing ribonucleoprotein complex GO:0006364 - rRNA processing GO:0008033 - tRNA processing GO:0046540 - U4/U6 x U5 tri-snRNP complex GO:0071001 - U4/U6 snRNP GO:1990726 - Lsm1-7-Pat1 complex
Homologous interactions	7

Homologous interactions

Color coding for hit scores

	1	95
Sc

1	93

Service provided by Combinatics, Japan

Last updated: 15 Jul 2024