HitPredict

Interactor 1: RSMB (P40018)
Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
Gene: SMB1

Interactor 2: LSM4 (P40070)
U6 snRNA-associated Sm-like protein LSm4 (Like-SM protein 4)
Gene: LSM4

Species: Saccharomyces cerevisiae S288C

Source: intact

Category: Small-scale

Confidence: High

Method score Annotation score Interaction score
0.79 1.00 0.894

The method score is based on:

Property Details
Experiments 10428970, 16429126, 37968396, 21558325
Identification Methods two hybrid, affinity chromatography technology, tandem affinity purification
Interaction Type physical association, direct interaction, association

The annotation score is based on:

Property Details
Interacting Pfam domains LSM~LSM
Common GO terms GO:0000387 - spliceosomal snRNP assembly
GO:0000398 - mRNA splicing, via spliceosome
GO:0005634 - nucleus
GO:0005681 - spliceosomal complex
GO:0005737 - cytoplasm
and 2 others

more...
Homologous interactions 6

Homologous interactions

Color coding for hit scores

1 196
Sc

1 187
+ Sc
+ Hs
+ Hs
+ Hs
+ Hs
+ Dm

Service provided by Combinatics, Japan

Last updated: 15 Jul 2024