HitPredict

Interactor 1: RRP41 (P46948)
Exosome complex component SKI6 (Extracellular mutant protein 20) (Ribosomal RNA-processing protein 41) (Superkiller protein 6)
Gene: SKI6

Interactor 2: RRP42 (Q12277)
Exosome complex component RRP42 (Ribosomal RNA-processing protein 42)
Gene: RRP42

Species: Saccharomyces cerevisiae S288C

Source: mint

Category: Small-scale

Confidence: High

Method score Annotation score Interaction score
0.93 0.60 0.748

The method score is based on:

Property Details
Experiments 11805826, 17173052, 16429126, 16829593, 37968396, 18314965, 19707589, 16729021
Identification Methods tandem affinity purification, affinity chromatography technology
Interaction Type physical association, association

The annotation score is based on:

Property Details
Interacting Pfam domains -
Common GO terms GO:0000176 - nuclear exosome (RNase complex)
GO:0000177 - cytoplasmic exosome (RNase complex)
GO:0000178 - exosome (RNase complex)
GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 - RNA binding
and 10 others

more...
Homologous interactions 20

Homologous interactions (Top 20)

Color coding for hit scores

1 246
Sc

1 265
+ At
+ At
+ Hs
+ Sc
+ Hs
+ At
+ Sp
+ Ss
+ Hs
+ Dm
+ Dm
+ Sp
+ Mt
+ Hs
+ At
+ At
+ At
+ Hs
+ Sp
+ At

Service provided by Combinatics, Japan

Last updated: 15 Jul 2024