Protein: R1AB
Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Cleaved into: Host translation inhibitor nsp1 (Leader protein) (Non-structural protein 1) (nsp1); Non-structural protein 2 (nsp2) (p65 homolog); Papain-like protease nsp3 (EC 3.4.19.12) (EC 3.4.22.-) (Non-structural protein 3) (nsp3) (PL2-PRO) (Papain-like proteinase) (PL-PRO); Non-structural protein 4 (nsp4); 3C-like proteinase nsp5 (3CL-PRO) (3CLp) (EC 3.4.22.69) (Main protease) (Mpro) (Non-structural protein 5) (nsp5) (SARS coronavirus main proteinase); Non-structural protein 6 (nsp6); Non-structural protein 7 (nsp7); Non-structural protein 8 (nsp8); Viral protein genome-linked nsp9 (Non-structural protein 9) (nsp9) (RNA-capping enzyme subunit nsp9); Non-structural protein 10 (nsp10) (Growth factor-like peptide) (GFL); RNA-directed RNA polymerase nsp12 (Pol) (RdRp) (EC 2.7.7.48) (EC 2.7.7.50) (Non-structural protein 12) (nsp12); Helicase nsp13 (Hel) (EC 3.6.4.12) (EC 3.6.4.13) (Non-structural protein 13) (nsp13); Guanine-N7 methyltransferase nsp14 (EC 2.1.1.56) (EC 3.1.13.-) (Non-structural protein 14) (nsp14) (Proofreading exoribonuclease nsp14) (ExoN); Uridylate-specific endoribonuclease nsp15 (EC 4.6.1.-) (NendoU) (Non-structural protein 15) (nsp15); 2'-O-methyltransferase nsp16 (EC 2.1.1.57) (Non-structural protein 16) (nsp16)]

Gene: R1AB, rep
Organism: Severe acute respiratory syndrome coronavirus 2
Interactions: 14
UniProt ID: P0DTD1

Gene Ontology (top 5):
GO:0000175 - 3'-5'-RNA exonuclease activity
GO:0002151 - G-quadruplex RNA binding
GO:0003723 - RNA binding
GO:0003727 - single-stranded RNA binding
GO:0003968 - RNA-dependent RNA polymerase activity

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

484795

R1AB
Replicase polyprotein 1ab

201

5

Small-scale

0.999

High

484793

NCAP
Nucleoprotein

10

1

Small-scale

0.760

High

484780

NS6
ORF6 protein

7

2

Small-scale

0.742

High

484759

AP3A
ORF3a protein

6

1

Small-scale

0.732

High

484784

NS7A
ORF7a protein

6

1

Small-scale

0.732

High

484796

ORF9B
ORF9b protein

4

1

Small-scale

0.683

High

484789

NS8
ORF8 protein

4

0

Small-scale

0.665

High

484797

NS7B
ORF7b protein

4

0

Small-scale

0.665

High

484753

SPIKE
Spike glycoprotein

4

0

Small-scale

0.658

High

484774

VME1
Membrane protein

4

0

Small-scale

0.655

High

484767

VEMP
Envelope small membrane protein

3

2

Small-scale

0.651

High

484747

R1A
Replicase polyprotein 1a

1

5

Small-scale

0.621

High

47128

ORF10
Putative ORF10 protein

6

0

Small-scale

0.378

High


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Last updated: 15 Jul 2024