HitPredict - High confidence protein-protein interactions

Download interactions: TXT MITAB-2.5

Interaction	Interactor	Experiments	Homologs	Category	Interaction Score	Confidence
439959	RPB3 DNA-directed RNA polymerase II subunit RPB3	26	16	Small-scale	0.991	High
375214	RPB1 DNA-directed RNA polymerase II subunit RPB1	19	20	Small-scale	0.987	High
440052	T2FB Transcription initiation factor IIF subunit beta	8	2	Small-scale	0.969	High
439987	RPB9 DNA-directed RNA polymerase II subunit RPB9	8	12	Small-scale	0.969	High
440009	RPB7 DNA-directed RNA polymerase II subunit RPB7	9	11	Small-scale	0.967	High
439968	RPAB2 DNA-directed RNA polymerases I, II, and III subunit RPABC2	7	8	Small-scale	0.965	High
439986	SPT5 Transcription elongation factor SPT5	7	4	Small-scale	0.960	High
439971	RPAB5 DNA-directed RNA polymerases I, II, and III subunit RPABC5	5	9	Small-scale	0.924	High
440032	RPB11 DNA-directed RNA polymerase II subunit RPB11	5	9	Small-scale	0.919	High
440051	T2FA Transcription initiation factor IIF subunit alpha	7	0	Small-scale	0.914	High
440024	PAF1 RNA polymerase II-associated protein 1	2	1	Small-scale	0.768	High
439989	TF2B Transcription initiation factor IIB	2	5	Small-scale	0.754	High
440078	H3 Histone H3	2	4	Small-scale	0.754	High
439967	RPAB1 DNA-directed RNA polymerases I, II, and III subunit RPABC1	9	9	Small-scale	0.752	High
439966	RPB4 DNA-directed RNA polymerase II subunit RPB4	8	3	Small-scale	0.744	High
439969	RPAB3 DNA-directed RNA polymerases I, II, and III subunit RPABC3	7	6	Small-scale	0.742	High
440002	MCES mRNA cap guanine-N7 methyltransferase	2	0	High-throughput	0.736	High
439980	RNA15 mRNA 3'-end-processing protein RNA15	1	1	Small-scale	0.724	High
440058	SET2 Histone-lysine N-methyltransferase, H3 lysine-36 specific	6	2	Small-scale	0.721	High
440083	NOP3 Serine/arginine	2	0	Small-scale	0.716	High
440041	RTR1 RNA polymerase II subunit B1 CTD phosphatase RTR1	5	3	Small-scale	0.709	High
440010	TAF14 Transcription initiation factor TFIID subunit 14	6	0	Small-scale	0.701	High
440106	CDC73 Cell division control protein 73	4	1	Small-scale	0.692	High
440039	RSP5 E3 ubiquitin-protein ligase RSP5	4	8	Small-scale	0.692	High
440072	NRD1 Protein NRD1	1	2	Small-scale	0.691	High
440005	SPT4 Transcription elongation factor SPT4	4	1	Small-scale	0.691	High
440110	IWR1 RNA polymerase II nuclear localization protein IWR1	4	1	Small-scale	0.691	High
440107	ASR1 Alcohol-sensitive RING finger protein 1	5	0	Small-scale	0.688	High
440104	IWS1 Transcription factor SPN1	4	1	High-throughput	0.688	High
440060	GPN1 GPN-loop GTPase 1	10	13	Small-scale	0.685	High
440044	RAD26 DNA repair and recombination protein RAD26	1	3	Small-scale	0.647	High
439997	SPT16 FACT complex subunit SPT16	3	1	Small-scale	0.640	High
439951	HSP71 Heat shock protein SSA1	3	6	High-throughput	0.634	High
439965	MED14 Mediator of RNA polymerase II transcription subunit 14	3	1	Small-scale	0.633	High
440035	PCF11 Protein PCF11	2	3	Small-scale	0.629	High
439982	RAD51 DNA repair protein RAD51	2	5	High-throughput	0.621	High
392019	H2A1 Histone H2A.1	1	3	High-throughput	0.618	High
406665	RS3 Small ribosomal subunit protein uS3	1	4	High-throughput	0.618	High
429583	RPAC1 DNA-directed RNA polymerases I and III subunit RPAC1	1	16	Small-scale	0.618	High
439944	RPB2 DNA-directed RNA polymerase II subunit RPB2	1	10	High-throughput	0.618	High
439973	RPC2 DNA-directed RNA polymerase III subunit RPC2	1	10	High-throughput	0.618	High
440014	CENPA Histone H3-like centromeric protein CSE4	1	4	High-throughput	0.618	High
440016	ELF1 Transcription elongation factor 1	1	1	High-throughput	0.618	High
440028	MIP6 RNA-binding protein MIP6	1	1	Small-scale	0.618	High
440045	RPAB4 DNA-directed RNA polymerases I, II, and III subunit RPABC4	1	6	High-throughput	0.618	High
440109	SUB2 ATP-dependent RNA helicase SUB2	1	1	High-throughput	0.618	High
440025	LEO1 RNA polymerase-associated protein LEO1	1	0	Small-scale	0.614	High
440082	UBP3 Ubiquitin carboxyl-terminal hydrolase 3	2	1	Small-scale	0.601	High
440098	RT103 Regulator of Ty1 transposition protein 103	2	10	Small-scale	0.601	High
439978	SIS1 Protein SIS1	2	3	High-throughput	0.588	High
440115	TAF10 Transcription initiation factor TFIID subunit 10	2	1	High-throughput	0.588	High
440071	SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	2	0	Small-scale	0.588	High
425569	KAPR cAMP-dependent protein kinase regulatory subunit	1	0	Small-scale	0.586	High
440034	NAB3 Nuclear polyadenylated RNA-binding protein 3	1	0	High-throughput	0.586	High
440086	HAP5 Transcriptional activator HAP5	1	0	High-throughput	0.586	High
440117	YRA1 RNA annealing protein YRA1	1	0	High-throughput	0.586	High
439975	ESS1 Peptidyl-prolyl cis-trans isomerase ESS1	2	0	High-throughput	0.585	High
439977	SPT6 Transcription elongation factor SPT6	2	1	High-throughput	0.584	High
440043	ATAD2 ATPase histone chaperone YTA7	2	5	Small-scale	0.584	High
440057	RPN11 Ubiquitin carboxyl-terminal hydrolase RPN11	2	5	High-throughput	0.584	High
440079	SEN1 Helicase SEN1	2	3	Small-scale	0.584	High
365601	HSP82 ATP-dependent molecular chaperone HSP82	2	4	High-throughput	0.571	High
439954	SSB1 Ribosome-associated molecular chaperone SSB1	2	6	High-throughput	0.571	High
439991	HS104 Heat shock protein 104	2	6	High-throughput	0.571	High
439988	URA7 CTP synthase 1	2	1	High-throughput	0.567	High
412436	KIN28 Serine/threonine-protein kinase KIN28	1	3	Small-scale	0.561	High
141065	RS9A Small ribosomal subunit protein uS4A	1	2	High-throughput	0.553	High
405336	RL26A Large ribosomal subunit protein uL24A	1	1	High-throughput	0.553	High
439952	HSP72 Heat shock protein SSA2	2	6	High-throughput	0.552	High
440042	SSB2 Ribosome-associated molecular chaperone SSB2	2	6	High-throughput	0.552	High
440000	MED18 Mediator of RNA polymerase II transcription subunit 18	2	0	Small-scale	0.547	High
440095	UFO1 Ubiquitin ligase complex F-box protein UFO1	1	0	Small-scale	0.537	High
389819	VDAC1 Mitochondrial outer membrane protein porin 1	1	3	High-throughput	0.536	High
412618	KAPA cAMP-dependent protein kinase type 1	1	4	High-throughput	0.536	High
412930	KAPB cAMP-dependent protein kinase type 2	1	4	High-throughput	0.536	High
439953	METK1 S-adenosylmethionine synthase 1	1	1	High-throughput	0.536	High
439990	XPO1 Exportin-1	1	3	High-throughput	0.536	High
440015	MAOM NAD-dependent malic enzyme, mitochondrial	1	1	High-throughput	0.536	High
440020	TAF5 Transcription initiation factor TFIID subunit 5	1	2	High-throughput	0.536	High
440029	MED6 Mediator of RNA polymerase II transcription subunit 6	1	2	High-throughput	0.536	High
440054	ELP2 Elongator complex protein 2	1	2	Small-scale	0.536	High
440073	BRE5 UBP3-associated protein BRE5	1	2	High-throughput	0.536	High
440090	GCN5 Histone acetyltransferase GCN5	1	8	High-throughput	0.536	High
440105	GPN3 GPN-loop GTPase 3	2	13	Small-scale	0.533	High
426495	GPT UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	1	0	High-throughput	0.518	High
439999	CBS Cystathionine beta-synthase	1	1	High-throughput	0.515	High
440033	SPT8 Transcription factor SPT8	1	0	High-throughput	0.513	High
440061	YMR1 Phosphoinositide 3-phosphatase	1	0	High-throughput	0.513	High
440087	GIP3 GLC7-interacting protein 3	1	0	High-throughput	0.513	High
440097	TAF9 Transcription initiation factor TFIID subunit 9	1	0	High-throughput	0.513	High
439948	UBI4P Polyubiquitin [Cleaved into: Ubiquitin]	1	5	High-throughput	0.501	High
439962	FUS3 Mitogen-activated protein kinase FUS3	1	2	High-throughput	0.501	High
439979	RNA14 mRNA 3'-end-processing protein RNA14	1	1	Small-scale	0.501	High
440018	T2EB Transcription initiation factor IIE subunit beta	1	1	Small-scale	0.501	High
339349	CDK1 Cyclin-dependent kinase 1	1	1	High-throughput	0.500	High
409589	KAPC cAMP-dependent protein kinase type 3	1	4	High-throughput	0.500	High
439972	DBF2 Cell cycle protein kinase DBF2	1	5	High-throughput	0.500	High
439974	SAN1 Protein SAN1	1	1	High-throughput	0.500	High
439976	PP2A2 Serine/threonine-protein phosphatase PP2A-2 catalytic subunit	1	5	High-throughput	0.500	High
439994	PP4C Serine/threonine-protein phosphatase 4 catalytic subunit	1	4	High-throughput	0.500	High
440006	PRS6B 26S proteasome regulatory subunit 6B homolog	1	2	High-throughput	0.500	High
440013	KDX1 Serine/threonine-protein kinase KDX1	1	2	High-throughput	0.500	High
440021	CHK1 Serine/threonine-protein kinase CHK1	1	1	High-throughput	0.500	High
440074	CBK1 Serine/threonine-protein kinase CBK1	1	3	High-throughput	0.500	High
440094	KU80 ATP-dependent DNA helicase II subunit 2	1	2	High-throughput	0.500	High
440119	RAD59 DNA repair protein RAD59	1	1	High-throughput	0.500	High
439956	GFA1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing]	1	4	High-throughput	0.489	High
440022	GID4 Vacuolar import and degradation protein 24	1	1	High-throughput	0.489	High
440027	SYNC Asparagine--tRNA ligase, cytoplasmic	1	3	High-throughput	0.489	High
440055	GCN20 Protein GCN20	1	6	High-throughput	0.489	High
440121	HSP42 Heat shock protein 42	1	2	High-throughput	0.489	High
439957	UBC5 Ubiquitin-conjugating enzyme E2-16 kDa	1	0	Small-scale	0.480	High
440017	T2EA Transcription initiation factor IIE subunit alpha	1	0	Small-scale	0.480	High
440068	RTF1 RNA polymerase-associated protein RTF1	1	0	Small-scale	0.480	High
440112	CLP1 mRNA cleavage and polyadenylation factor CLP1	1	0	Small-scale	0.480	High
439970	FAR1 Cyclin-dependent kinase inhibitor FAR1	1	0	High-throughput	0.479	High
439984	MGMT Methylated-DNA--protein-cysteine methyltransferase	1	0	High-throughput	0.479	High
440001	RAD24 Checkpoint protein RAD24	1	0	High-throughput	0.479	High
440070	BUD32 EKC/KEOPS complex subunit BUD32	1	0	High-throughput	0.479	High
356175	H4 Histone H4	1	3	High-throughput	0.479	High
402842	ERF3 Eukaryotic peptide chain release factor GTP-binding subunit	1	3	Small-scale	0.479	High
413214	RS14A Small ribosomal subunit protein uS11A	1	1	High-throughput	0.479	High
439950	RS18A Small ribosomal subunit protein uS13A	1	2	High-throughput	0.479	High
439960	EF3A Elongation factor 3A	1	7	High-throughput	0.479	High
439995	RPC3 DNA-directed RNA polymerase III subunit RPC3	1	3	High-throughput	0.479	High
440003	RSSA1 Small ribosomal subunit protein uS2A	1	1	High-throughput	0.479	High
440012	RS27A Small ribosomal subunit protein eS27A	1	1	High-throughput	0.479	High
440019	GBLP Small ribosomal subunit protein RACK1	1	3	High-throughput	0.479	High
440026	RS20 Small ribosomal subunit protein uS10	1	3	High-throughput	0.479	High
440037	IF4F1 Eukaryotic initiation factor 4F subunit p150	1	2	High-throughput	0.479	High
440049	DSN1 Kinetochore-associated protein DSN1	1	2	High-throughput	0.479	High
440065	UBP15 Ubiquitin carboxyl-terminal hydrolase 15	1	2	High-throughput	0.479	High
440076	APJ1 J domain-containing protein APJ1	1	3	High-throughput	0.479	High
440077	SAM50 Sorting assembly machinery 50 kDa subunit	1	1	High-throughput	0.479	High
440081	MCE1 mRNA-capping enzyme subunit alpha	1	1	High-throughput	0.479	High
440089	TOM1 E3 ubiquitin-protein ligase TOM1	1	8	High-throughput	0.479	High
440092	RUVB1 RuvB-like protein 1	1	8	High-throughput	0.479	High
440093	RBA50 RNA polymerase II-associated protein RBA50	1	3	High-throughput	0.479	High
440096	POB3 FACT complex subunit POB3	1	2	High-throughput	0.479	High
440099	RBS1 RNA-binding suppressor of PAS kinase protein 1	1	1	Small-scale	0.479	High
440101	MMS22 E3 ubiquitin-protein ligase substrate receptor MMS22	1	2	High-throughput	0.479	High
440103	TFC6 Transcription factor tau 91 kDa subunit	1	2	High-throughput	0.479	High
440111	SGO1 Shugoshin	1	2	High-throughput	0.479	High
440116	YL11B Transposon Ty1-LR1 Gag-Pol polyprotein	1	5	High-throughput	0.479	High
440123	RUVB2 RuvB-like protein 2	1	8	High-throughput	0.479	High
439963	HPR1 THO complex subunit HPR1	1	0	Small-scale	0.458	High
440007	MED9 Mediator of RNA polymerase II transcription subunit 9	1	0	Small-scale	0.458	High
440031	PP2C7 Protein phosphatase 2C homolog 7, mitochondrial	1	0	High-throughput	0.458	High
440038	RS26B Small ribosomal subunit protein eS26B	1	0	High-throughput	0.458	High
440075	CUZ1 CDC48-associated ubiquitin-like/zinc finger protein 1	1	0	Small-scale	0.458	High
440080	PRP38 Pre-mRNA-splicing factor 38	1	0	High-throughput	0.458	High
440088	ESP1 Separin	1	0	High-throughput	0.458	High
440100	COQ9 Ubiquinone biosynthesis protein COQ9, mitochondrial	1	0	High-throughput	0.458	High
440102	YL455 PWWP domain-containing protein YLR455W	1	0	Small-scale	0.458	High
440118	SIZ2 E3 SUMO-protein ligase SIZ2	1	0	High-throughput	0.458	High
439993	DBF20 Serine/threonine-protein kinase DBF20	1	5	High-throughput	0.457	High
367627	EF1A Elongation factor 1-alpha	1	3	High-throughput	0.445	High
427151	ILVB Acetolactate synthase catalytic subunit, mitochondrial	1	2	High-throughput	0.445	High
439958	VATB V-type proton ATPase subunit B	1	2	High-throughput	0.445	High
439961	APA1 Protein APA1 [Includes: Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase 1	1	1	High-throughput	0.445	High
439983	MAS5 Mitochondrial protein import protein MAS5	1	3	High-throughput	0.445	High
440011	DEF1 RNA polymerase II degradation factor 1	1	1	High-throughput	0.445	High
440030	SSZ1 Ribosome-associated complex subunit SSZ1	1	2	High-throughput	0.445	High
440046	LYS12 Homoisocitrate dehydrogenase, mitochondrial	1	1	High-throughput	0.445	High
440048	DJP1 DnaJ-like protein 1	1	4	High-throughput	0.445	High
440064	PHB2 Prohibitin-2	1	1	High-throughput	0.445	High
440066	UBP8 Ubiquitin carboxyl-terminal hydrolase 8	1	1	High-throughput	0.445	High
440067	ACS2 Acetyl-coenzyme A synthetase 2	1	1	High-throughput	0.445	High
440085	ADA2 Transcriptional adapter 2	1	3	High-throughput	0.445	High
357789	RS17A Small ribosomal subunit protein eS17A	1	2	High-throughput	0.437	High
382861	RL25 Large ribosomal subunit protein uL23	1	1	Small-scale	0.437	High
407629	RS13 Small ribosomal subunit protein uS15	1	1	High-throughput	0.437	High
425668	RS19A Small ribosomal subunit protein eS19A	1	2	High-throughput	0.437	High
439945	SYIC Isoleucine--tRNA ligase, cytoplasmic	1	1	High-throughput	0.437	High
439946	RS22A Small ribosomal subunit protein uS8A	1	2	High-throughput	0.437	High
439947	RL31A Large ribosomal subunit protein eL31A	1	1	High-throughput	0.437	High
439949	RS6A Small ribosomal subunit protein eS6A	1	2	High-throughput	0.437	High
439955	CAF20 Cap-associated protein CAF20	1	1	High-throughput	0.437	High
439981	RS2 Small ribosomal subunit protein uS5	1	4	High-throughput	0.437	High
439985	RS7A Small ribosomal subunit protein eS7A	1	2	High-throughput	0.437	High
440004	SMY2 Protein SMY2	1	2	High-throughput	0.437	High
440008	RS3A1 Small ribosomal subunit protein eS1A	1	1	High-throughput	0.437	High
440036	LAA1 AP-1 accessory protein LAA1	1	1	High-throughput	0.437	High
440056	BUD27 Bud site selection protein 27	1	2	High-throughput	0.437	High
440062	RS12 Small ribosomal subunit protein eS12	1	2	High-throughput	0.437	High
440063	VATG V-type proton ATPase subunit G	1	1	High-throughput	0.437	High
440084	RS15 Small ribosomal subunit protein uS19	1	4	High-throughput	0.437	High
440108	VAM6 Vacuolar morphogenesis protein 6	1	2	High-throughput	0.437	High
440113	GPN2 GPN-loop GTPase 2	1	13	High-throughput	0.437	High
440114	RS10A Small ribosomal subunit protein eS10A	1	2	High-throughput	0.437	High
440124	RTP1 RNA polymerase II assembly factor RTP1	1	1	Small-scale	0.437	High
439992	MED16 Mediator of RNA polymerase II transcription subunit 16	1	0	High-throughput	0.426	High
439998	MED17 Mediator of RNA polymerase II transcription subunit 17	1	0	Small-scale	0.426	High
440120	MED1 Mediator of RNA polymerase II transcription subunit 1	1	0	High-throughput	0.426	High
343253	TRPG Multifunctional tryptophan biosynthesis protein [Includes: Anthranilate synthase component 2	1	2	High-throughput	0.407	High
440047	EMC5 ER membrane protein complex subunit 5	1	0	High-throughput	0.282	High
440069	MON1 Vacuolar fusion protein MON1	1	0	High-throughput	0.269	Low
439964	CDC42 Cell division control protein 42	1	0	High-throughput	0.261	Low
439996	CDC11 Cell division control protein 11	1	0	High-throughput	0.261	Low
440023	ATG12 Ubiquitin-like protein ATG12	1	0	High-throughput	0.261	Low
440050	COPB2 Coatomer subunit beta'	1	0	High-throughput	0.261	Low
440053	SKP2 F-box protein SKP2	1	0	High-throughput	0.261	Low
440122	HRT3 F-box protein HRT3	1	0	High-throughput	0.261	Low
140422	CET1 mRNA-capping enzyme subunit beta	1	0	High-throughput	0.249	Low
440040	BIM1 Protein BIM1	1	0	High-throughput	0.249	Low
440059	MPS3 Spindle pole body assembly component MPS3	1	0	High-throughput	0.249	Low
440091	BUL2 Ubiquitin ligase-binding protein BUL2	1	0	Small-scale	0.249	Low