Protein: RS3
Small ribosomal subunit protein uS3 (30S ribosomal protein S3)

Gene: RS3, rpsC
Organism: Escherichia coli K-12
Interactions: 224
UniProt ID: P0A7V3

Gene Ontology (top 5):
GO:0000028 - ribosomal small subunit assembly
GO:0002181 - cytoplasmic translation
GO:0003729 - mRNA binding
GO:0003735 - structural constituent of ribosome
GO:0005737 - cytoplasm

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

462015

OBG
GTPase ObgE/CgtA

1

5

High-throughput

0.691

High

461924

CSPC
Cold shock-like protein CspC

3

8

High-throughput

0.657

High

461983

LPXD
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase

3

2

High-throughput

0.657

High

462057

DCYD
D-cysteine desulfhydrase

3

3

High-throughput

0.650

High

461962

NUSA
Transcription termination/antitermination protein NusA

3

0

High-throughput

0.629

High

458608

DER
GTPase Der

1

2

High-throughput

0.625

High

461888

RS5
Small ribosomal subunit protein uS5

1

3

High-throughput

0.625

High

461908

RPOB
DNA-directed RNA polymerase subunit beta

1

4

High-throughput

0.625

High

461923

CSPA
Cold shock protein CspA

2

8

High-throughput

0.612

High

393726

PNP
Polyribonucleotide nucleotidyltransferase

2

4

High-throughput

0.588

High

461919

LON
Lon protease

2

2

High-throughput

0.588

High

461971

SELB
Selenocysteine-specific elongation factor

2

4

High-throughput

0.588

High

461980

RNR
Ribonuclease R

2

2

High-throughput

0.588

High

462008

RLUB
Ribosomal large subunit pseudouridine synthase B

2

3

High-throughput

0.588

High

462024

RL4
Large ribosomal subunit protein uL4

2

2

High-throughput

0.588

High

461895

TIG
Trigger factor

2

0

Small-scale

0.576

High

461952

RL23
Large ribosomal subunit protein uL23

2

0

High-throughput

0.576

High

461963

NUSG
Transcription termination/antitermination protein NusG

2

0

High-throughput

0.576

High

461887

RS4
Small ribosomal subunit protein uS4

1

1

High-throughput

0.575

High

368562

DNAA
Chromosomal replication initiator protein DnaA

2

0

High-throughput

0.563

High

459028

HSLO
33 kDa chaperonin

2

0

High-throughput

0.563

High

459970

RPPH
RNA pyrophosphohydrolase

2

0

High-throughput

0.563

High

460272

PYRH
Uridylate kinase

2

0

High-throughput

0.563

High

461890

RNH
Ribonuclease HI

2

0

High-throughput

0.563

High

461918

PHOL
PhoH-like protein

2

0

High-throughput

0.563

High

461927

YBCJ
Putative RNA-binding protein YbcJ

2

0

High-throughput

0.563

High

461966

SPOT
Bifunctional

2

0

High-throughput

0.563

High

461986

PSS
CDP-diacylglycerol--serine O-phosphatidyltransferase

2

0

High-throughput

0.563

High

461954

DCM
DNA-cytosine methyltransferase

2

2

High-throughput

0.549

High

459632

KPRS
Ribose-phosphate pyrophosphokinase

2

0

High-throughput

0.547

High

461972

TOP3
DNA topoisomerase 3

2

1

High-throughput

0.537

High

462016

HRPA
ATP-dependent RNA helicase HrpA

2

2

High-throughput

0.537

High

389166

SYE
Glutamate--tRNA ligase

1

1

High-throughput

0.536

High

439010

YCIH
Uncharacterized protein YciH

1

1

High-throughput

0.536

High

459359

HSCA
Chaperone protein HscA

1

2

High-throughput

0.536

High

460907

RL27
Large ribosomal subunit protein bL27

1

1

High-throughput

0.536

High

461396

RS13
Small ribosomal subunit protein uS13

1

2

High-throughput

0.536

High

461889

RS9
Small ribosomal subunit protein uS9

1

2

High-throughput

0.536

High

461904

SYT
Threonine--tRNA ligase

1

2

High-throughput

0.536

High

461912

CSPG
Cold shock-like protein CspG

1

8

High-throughput

0.536

High

461917

RNG
Ribonuclease G

1

1

High-throughput

0.536

High

461921

GATD
Galactitol 1-phosphate 5-dehydrogenase

1

1

High-throughput

0.536

High

461925

RL13
Large ribosomal subunit protein uL13

1

2

High-throughput

0.536

High

461935

GLMU
Bifunctional protein GlmU [Includes: UDP-N-acetylglucosamine pyrophosphorylase

1

2

High-throughput

0.536

High

461958

FLIA
RNA polymerase sigma factor FliA

1

1

High-throughput

0.536

High

461988

ACPS
Holo-[acyl-carrier-protein] synthase

1

1

High-throughput

0.536

High

461989

RECG
ATP-dependent DNA helicase RecG

1

3

High-throughput

0.536

High

462005

CSPB
Cold shock-like protein CspB

1

8

High-throughput

0.536

High

462022

RL2
Large ribosomal subunit protein uL2

1

1

High-throughput

0.536

High

462026

GADW
HTH-type transcriptional regulator GadW

1

2

High-throughput

0.536

High

462042

RLMKL
Ribosomal RNA large subunit methyltransferase K/L [Includes: 23S rRNA m2G2445 methyltransferase

1

1

High-throughput

0.536

High

462064

HSCC
Chaperone protein HscC

1

5

High-throughput

0.536

High

462047

YMFJ
Uncharacterized protein YmfJ

1

0

High-throughput

0.518

High

381650

3MG2
DNA-3-methyladenine glycosylase 2

1

0

High-throughput

0.513

High

458746

FIS
DNA-binding protein Fis

1

0

High-throughput

0.513

High

460466

RL11
Large ribosomal subunit protein uL11

1

0

High-throughput

0.513

High

461504

RS16
Small ribosomal subunit protein bS16

1

0

High-throughput

0.513

High

461896

TRPR
Trp operon repressor

1

0

High-throughput

0.513

High

461897

YBEY
Endoribonuclease YbeY

1

0

High-throughput

0.513

High

461901

YQGF
Putative pre-16S rRNA nuclease

1

0

High-throughput

0.513

High

461914

GLN1B
Glutamine synthetase

1

0

High-throughput

0.513

High

461915

GLPX
Fructose-1,6-bisphosphatase 1 class 2

1

0

High-throughput

0.513

High

461916

MUG
G/U mismatch-specific DNA glycosylase

1

0

High-throughput

0.513

High

461928

YCED
Large ribosomal RNA subunit accumulation protein YceD

1

0

High-throughput

0.513

High

461931

BCCP
Biotin carboxyl carrier protein of acetyl-CoA carboxylase

1

0

High-throughput

0.513

High

461934

GLRX4
Glutaredoxin 4

1

0

High-throughput

0.513

High

461941

YMJA
Uncharacterized protein YmjA

1

0

High-throughput

0.513

High

461943

YFCZ
UPF0381 protein YfcZ

1

0

High-throughput

0.513

High

461948

RLMM
Ribosomal RNA large subunit methyltransferase M

1

0

High-throughput

0.513

High

461951

RL16
Large ribosomal subunit protein uL16

1

0

High-throughput

0.513

High

461953

RS15
Small ribosomal subunit protein uS15

1

0

High-throughput

0.513

High

461956

RIMO
Ribosomal protein uS12 methylthiotransferase RimO

1

0

High-throughput

0.513

High

461957

FKBX
FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase

1

0

High-throughput

0.513

High

461960

TSAE
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE

1

0

High-throughput

0.513

High

461965

SSPB
Stringent starvation protein B

1

0

High-throughput

0.513

High

461967

RL17
Large ribosomal subunit protein bL17

1

0

High-throughput

0.513

High

461968

SECB
Protein-export protein SecB

1

0

High-throughput

0.513

High

461976

MINC
Septum site-determining protein MinC

1

0

High-throughput

0.513

High

462007

WAAF
Lipopolysaccharide heptosyltransferase 2

1

0

High-throughput

0.513

High

462010

YGGL
Uncharacterized protein YggL

1

0

High-throughput

0.513

High

462012

RSMC
Ribosomal RNA small subunit methyltransferase C

1

0

High-throughput

0.513

High

462014

SPRT
Protein SprT

1

0

High-throughput

0.513

High

462032

RCNR
Transcriptional repressor RcnR

1

0

High-throughput

0.513

High

462038

CUTA
Divalent-cation tolerance protein CutA

1

0

High-throughput

0.513

High

462058

MTFA
Mlc titration factor A

1

0

High-throughput

0.513

High

462043

RLMI
Ribosomal RNA large subunit methyltransferase I

1

1

High-throughput

0.500

High

461973

ICLR
Transcriptional repressor IclR

1

0

High-throughput

0.493

High

342423

TRPE
Anthranilate synthase component 1

1

1

High-throughput

0.489

High

392841

ILVA
L-threonine dehydratase biosynthetic IlvA

1

3

High-throughput

0.489

High

461937

MELR
Melibiose operon regulatory protein

1

2

High-throughput

0.489

High

461974

MUTY
Adenine DNA glycosylase

1

1

High-throughput

0.489

High

461975

PRIA
Primosomal protein N'

1

7

High-throughput

0.489

High

461998

RLUF
Dual-specificity RNA pseudouridine synthase RluF

1

2

High-throughput

0.489

High

462045

RLUE
Ribosomal large subunit pseudouridine synthase E

1

2

High-throughput

0.489

High

462065

WCAA
Putative colanic acid biosynthesis glycosyl transferase WcaA

1

1

High-throughput

0.489

High

340853

RPOD
RNA polymerase sigma factor RpoD

1

1

High-throughput

0.484

High

415742

TOP1
DNA topoisomerase 1

1

1

High-throughput

0.484

High

439424

USG
USG-1 protein

1

1

High-throughput

0.484

High

460108

IPYR
Inorganic pyrophosphatase

1

1

High-throughput

0.484

High

461892

RPOA
DNA-directed RNA polymerase subunit alpha

1

1

High-throughput

0.484

High

461903

RHLB
ATP-dependent RNA helicase RhlB

1

5

High-throughput

0.484

High

461906

SYK2
Lysine--tRNA ligase, heat inducible

1

3

High-throughput

0.484

High

461907

RPOC
DNA-directed RNA polymerase subunit beta'

1

3

High-throughput

0.484

High

461911

CSPD
Cold shock-like protein CspD

1

8

High-throughput

0.484

High

461920

DEAD
ATP-dependent RNA helicase DeaD

1

6

High-throughput

0.484

High

461926

RLUC
Ribosomal large subunit pseudouridine synthase C

1

3

High-throughput

0.484

High

461970

RCSB
Transcriptional regulatory protein RcsB

1

1

High-throughput

0.484

High

461981

SRMB
ATP-dependent RNA helicase SrmB

1

5

High-throughput

0.484

High

461982

RNE
Ribonuclease E

1

1

High-throughput

0.484

High

461984

MUKB
Chromosome partition protein MukB

1

2

High-throughput

0.484

High

462002

CBPA
Curved DNA-binding protein

1

1

High-throughput

0.484

High

461932

PCNB
Poly(A) polymerase I

1

0

High-throughput

0.479

High

462033

YQJI
Transcriptional regulator YqjI

1

0

High-throughput

0.479

High

442664

DNAJ
Chaperone protein DnaJ

1

4

High-throughput

0.479

High

454978

GLTD
Glutamate synthase [NADPH] small chain

1

1

High-throughput

0.479

High

461978

PARE
DNA topoisomerase 4 subunit B

1

2

High-throughput

0.479

High

343879

SYGA
Glycine--tRNA ligase alpha subunit

1

0

High-throughput

0.464

High

416825

BIRA
Bifunctional ligase/repressor BirA

1

0

High-throughput

0.464

High

458711

FABZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ

1

0

High-throughput

0.464

High

458907

HFQ
RNA-binding protein Hfq

1

0

High-throughput

0.464

High

459001

IHFB
Integration host factor subunit beta

1

0

High-throughput

0.464

High

459527

IF3
Translation initiation factor IF-3 [Cleaved into: Translation initiation factor IF-3, N-terminally processed; Translation initiation factor IF-3S]

1

0

High-throughput

0.464

High

459582

KDSA
2-dehydro-3-deoxyphosphooctonate aldolase

1

0

High-throughput

0.464

High

461894

SSRP
SsrA-binding protein

1

0

High-throughput

0.464

High

461900

UVRC
UvrABC system protein C

1

0

High-throughput

0.464

High

461922

ULAR
HTH-type transcriptional regulator UlaR

1

0

High-throughput

0.464

High

461936

HSLR
Heat shock protein 15

1

0

High-throughput

0.464

High

461969

YFIF
Uncharacterized tRNA/rRNA methyltransferase YfiF

1

0

High-throughput

0.464

High

462004

RLMN
Dual-specificity RNA methyltransferase RlmN

1

0

High-throughput

0.464

High

462011

RSGA
Small ribosomal subunit biogenesis GTPase RsgA

1

0

High-throughput

0.464

High

462044

NPD
NAD-dependent protein deacylase

1

0

High-throughput

0.464

High

458678

FABA
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase

1

0

High-throughput

0.458

High

461898

RIMP
Ribosome maturation factor RimP

1

0

High-throughput

0.458

High

461905

YEEX
UPF0265 protein YeeX

1

0

High-throughput

0.458

High

461909

YFBU
UPF0304 protein YfbU

1

0

High-throughput

0.458

High

461910

BLC
Outer membrane lipoprotein Blc

1

0

High-throughput

0.458

High

461946

YIBL
Uncharacterized protein YibL

1

0

High-throughput

0.458

High

461985

ISPA
Farnesyl diphosphate synthase

1

0

High-throughput

0.458

High

461987

PHOP
Transcriptional regulatory protein PhoP

1

0

High-throughput

0.458

High

462027

GMHBB
D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase

1

0

High-throughput

0.458

High

462028

YDCY
Uncharacterized protein YdcY

1

0

High-throughput

0.458

High

462039

CSRA
Carbon storage regulator

1

0

High-throughput

0.458

High

462061

YFFS
Uncharacterized protein YffS

1

0

High-throughput

0.458

High

462068

MENI
1,4-dihydroxy-2-naphthoyl-CoA hydrolase

1

0

High-throughput

0.458

High

461938

CRA
Catabolite repressor/activator

1

1

High-throughput

0.442

High

461930

ATPG
ATP synthase gamma chain

1

1

High-throughput

0.437

High

462003

YADG
Uncharacterized ABC transporter ATP-binding protein YadG

1

1

High-throughput

0.437

High

462063

GTRB
Prophage bactoprenol glucosyl transferase homolog

1

1

High-throughput

0.437

High

461944

FIMB
Type 1 fimbriae regulatory protein FimB

3

0

High-throughput

0.342

High

461899

YACL
UPF0231 protein YacL

2

0

High-throughput

0.307

High

462041

YBJX
Uncharacterized protein YbjX

2

0

High-throughput

0.307

High

461947

YIFL
Uncharacterized lipoprotein YifL

1

0

High-throughput

0.282

High

462035

YGDI
Uncharacterized lipoprotein YgdI

1

0

High-throughput

0.282

High

335634

NDH
Type II NADH:quinone oxidoreductase

1

0

High-throughput

0.279

Low

410644

ADA
Bifunctional transcriptional activator/DNA repair enzyme Ada

1

0

High-throughput

0.279

Low

415710

BTUE
Thioredoxin/glutathione peroxidase BtuE

1

0

High-throughput

0.279

Low

421195

PRIB
Primosomal replication protein N

1

0

High-throughput

0.279

Low

448109

YJAA
Uncharacterized protein YjaA

1

0

High-throughput

0.279

Low

460368

RECO
DNA repair protein RecO

1

0

High-throughput

0.279

Low

461893

SMG
Protein Smg

1

0

High-throughput

0.279

Low

461929

YCGL
Protein YcgL

1

0

High-throughput

0.279

Low

461933

FLAW
Flavodoxin 2

1

0

High-throughput

0.279

Low

461939

LPXL
Lipid A biosynthesis lauroyltransferase

1

0

High-throughput

0.279

Low

461942

YDIE
Uncharacterized protein YdiE

1

0

High-throughput

0.279

Low

461945

PINR
Serine recombinase PinR

1

0

High-throughput

0.279

Low

461950

YGIC
Putative acid--amine ligase YgiC

1

0

High-throughput

0.279

Low

461955

DMA
DNA adenine methylase

1

0

High-throughput

0.279

Low

461959

HYCI
Hydrogenase 3 maturation protease

1

0

High-throughput

0.279

Low

461961

YJFI
Uncharacterized protein YjfI

1

0

High-throughput

0.279

Low

461964

MEPS
Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase

1

0

High-throughput

0.279

Low

461977

HYAF
Hydrogenase-1 operon protein HyaF

1

0

High-throughput

0.279

Low

461979

SPEA
Biosynthetic arginine decarboxylase

1

0

High-throughput

0.279

Low

461990

RP54
RNA polymerase sigma-54 factor

1

0

High-throughput

0.279

Low

461992

WAAG
Lipopolysaccharide glucosyltransferase WaaG

1

0

High-throughput

0.279

Low

461993

WAAY
Lipopolysaccharide core heptose(II) kinase WaaY

1

0

High-throughput

0.279

Low

461994

ROXA
Ribosomal protein uL16 3-hydroxylase

1

0

High-throughput

0.279

Low

461997

CBRC
UPF0167 protein CbrC

1

0

High-throughput

0.279

Low

461999

MDTN
Multidrug resistance protein MdtN

1

0

High-throughput

0.279

Low

462000

OPGG
Glucans biosynthesis protein G

1

0

High-throughput

0.279

Low

462006

YCHJ
UPF0225 protein YchJ

1

0

High-throughput

0.279

Low

462017

YHBQ
UPF0213 protein YhbQ

1

0

High-throughput

0.279

Low

462019

YGFF
Uncharacterized oxidoreductase YgfF

1

0

High-throughput

0.279

Low

462020

RATB
UPF0125 protein RatB

1

0

High-throughput

0.279

Low

462023

FIXA
Protein FixA

1

0

High-throughput

0.279

Low

462030

YDIZ
Uncharacterized protein YdiZ

1

0

High-throughput

0.279

Low

462034

YHCO
Uncharacterized protein YhcO

1

0

High-throughput

0.279

Low

462036

DIAA
DnaA initiator-associating protein DiaA

1

0

High-throughput

0.279

Low

462037

HIGA
Antitoxin HigA

1

0

High-throughput

0.279

Low

462040

WCAK
Colanic acid biosynthesis protein WcaK

1

0

High-throughput

0.279

Low

462046

YMFD
Uncharacterized protein YmfD

1

0

High-throughput

0.279

Low

462048

YMGA
Probable two-component-system connector protein YmgA

1

0

High-throughput

0.279

Low

462049

YCGY
Uncharacterized protein YcgY

1

0

High-throughput

0.279

Low

462050

YNAE
Uncharacterized protein YnaE

1

0

High-throughput

0.279

Low

462054

YNEG
Uncharacterized protein YneG

1

0

High-throughput

0.279

Low

462055

YNJA
Uncharacterized protein YnjA

1

0

High-throughput

0.279

Low

462059

YFDS
Uncharacterized protein YfdS

1

0

High-throughput

0.279

Low

462060

YPEA
Acetyltransferase YpeA

1

0

High-throughput

0.279

Low

462062

YPJB
Protein YpjB

1

0

High-throughput

0.279

Low

462066

FLXA
Protein FlxA

1

0

High-throughput

0.279

Low

462069

MQSR
mRNA interferase toxin MqsR

1

0

High-throughput

0.279

Low

462070

CSE1
CRISPR system Cascade subunit CasA

1

0

High-throughput

0.279

Low

462071

YAFP
Uncharacterized N-acetyltransferase YafP

1

0

High-throughput

0.279

Low

461949

YGGE
Uncharacterized protein YggE

1

0

High-throughput

0.261

Low

462031

YODC
Uncharacterized protein YodC

1

0

High-throughput

0.261

Low

460074

PLSB
Glycerol-3-phosphate acyltransferase

1

0

High-throughput

0.253

Low

461891

RNPA
Ribonuclease P protein component

1

0

High-throughput

0.253

Low

461902

TRMB
tRNA

1

0

High-throughput

0.253

Low

461995

HOLA
DNA polymerase III subunit delta

1

0

High-throughput

0.253

Low

462001

NIKE
Nickel import ATP-binding protein NikE

1

0

High-throughput

0.253

Low

462029

YDIH
Uncharacterized protein YdiH

1

0

High-throughput

0.253

Low

462052

RLHA
23S rRNA 5-hydroxycytidine C2501 synthase

1

0

High-throughput

0.253

Low

461913

GLPC
Anaerobic glycerol-3-phosphate dehydrogenase subunit C

1

0

High-throughput

0.249

Low

461940

LAPA
Lipopolysaccharide assembly protein A

1

0

High-throughput

0.249

Low

461991

YIDC
Membrane protein insertase YidC

1

0

Small-scale

0.249

Low

461996

POTF
Putrescine-binding periplasmic protein PotF

1

0

High-throughput

0.249

Low

462009

USPF
Universal stress protein F

1

0

High-throughput

0.249

Low

462013

YJJU
Uncharacterized protein YjjU

1

0

High-throughput

0.249

Low

462018

YHDP
Uncharacterized protein YhdP

1

0

High-throughput

0.249

Low

462021

CSIE
Stationary phase-inducible protein CsiE

1

0

High-throughput

0.249

Low

462025

LOLB
Outer-membrane lipoprotein LolB

1

0

High-throughput

0.249

Low

462051

INSQ
Putative RNA-guided DNA endonuclease InsQ

1

0

High-throughput

0.249

Low

462053

YNCE
Uncharacterized protein YncE

1

0

High-throughput

0.249

Low

462056

YEAO
Uncharacterized protein YeaO

1

0

High-throughput

0.249

Low

462067

YBAY
Uncharacterized lipoprotein YbaY

1

0

High-throughput

0.249

Low


Service provided by Combinatics, Japan

Last updated: 15 Jul 2024