Protein: UTP9
U3 small nucleolar RNA-associated protein 9 (U3 snoRNA-associated protein 9) (U three protein 9) (U3 protein 9 required for transcription) (t-UTP9)

Gene: UTP9
Organism: Saccharomyces cerevisiae S288C
Interactions: 152
UniProt ID: P38882

Gene Ontology (top 5):
GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 - nucleus
GO:0005730 - nucleolus
GO:0030490 - maturation of SSU-rRNA
GO:0030686 - 90S preribosome

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

756775

UTP17
NET1-associated nuclear protein 1

8

3

Small-scale

0.752

High

756797

UTP4
U3 small nucleolar RNA-associated protein 4

7

1

Small-scale

0.746

High

635578

PWP2
Periodic tryptophan protein 2

6

1

High-throughput

0.732

High

756762

UTP8
U3 small nucleolar RNA-associated protein 8

12

0

Small-scale

0.727

High

756780

UTP15
U3 small nucleolar RNA-associated protein 15

8

0

Small-scale

0.721

High

756778

UTP5
U3 small nucleolar RNA-associated protein 5

5

1

High-throughput

0.719

High

756747

UTP10
U3 small nucleolar RNA-associated protein 10

8

0

High-throughput

0.718

High

756815

NOP58
Nucleolar protein 58

5

1

Small-scale

0.714

High

756794

NOC4
Nucleolar complex protein 4

7

0

Small-scale

0.712

High

756753

MPP10
U3 small nucleolar RNA-associated protein MPP10

5

0

Small-scale

0.688

High

756779

DHR1
Probable ATP-dependent RNA helicase DHR1

5

0

Small-scale

0.672

High

756811

UTP12
U3 small nucleolar RNA-associated protein 12

3

2

High-throughput

0.667

High

756813

NOP56
Nucleolar protein 56

3

1

High-throughput

0.667

High

756768

NAT10
RNA cytidine acetyltransferase

4

0

High-throughput

0.664

High

756807

BMS1
Ribosome biogenesis protein BMS1

4

0

High-throughput

0.664

High

748605

ENP1
Essential nuclear protein 1

4

0

Small-scale

0.643

High

707085

DCA13
Protein SOF1

3

0

High-throughput

0.638

High

715928

UTP20
U3 small nucleolar RNA-associated protein 20

3

0

High-throughput

0.638

High

756739

UTP7
U3 small nucleolar RNA-associated protein 7

3

0

High-throughput

0.638

High

756760

UTP22
U3 small nucleolar RNA-associated protein 22

3

0

High-throughput

0.638

High

756774

UTP6
U3 small nucleolar RNA-associated protein 6

3

0

High-throughput

0.638

High

756782

RRP5
rRNA biogenesis protein RRP5

3

0

High-throughput

0.638

High

756791

NEP1
Ribosomal RNA small subunit methyltransferase NEP1

3

0

High-throughput

0.638

High

756793

RRP9
Ribosomal RNA-processing protein 9

3

0

High-throughput

0.638

High

756817

RRP12
Ribosomal RNA-processing protein 12

3

0

High-throughput

0.638

High

756819

NOP14
Nucleolar complex protein 14

3

0

High-throughput

0.638

High

407519

RS9B
Small ribosomal subunit protein uS4B

2

1

High-throughput

0.628

High

706267

RS3A1
Small ribosomal subunit protein eS1A

2

1

High-throughput

0.628

High

756788

MRD1
Multiple RNA-binding domain-containing protein 1

2

1

Small-scale

0.628

High

480666

RS8A
Small ribosomal subunit protein eS8A

3

0

Small-scale

0.613

High

700065

IMP3
U3 small nucleolar ribonucleoprotein protein IMP3

2

1

High-throughput

0.611

High

756781

UTP14
U3 small nucleolar RNA-associated protein 14

3

0

High-throughput

0.606

High

407912

RS13
Small ribosomal subunit protein uS15

2

0

High-throughput

0.602

High

549395

FBRL
rRNA 2'-O-methyltransferase fibrillarin

2

0

High-throughput

0.602

High

644887

RS5
Small ribosomal subunit protein uS7

2

0

High-throughput

0.602

High

645438

RS7A
Small ribosomal subunit protein eS7A

2

0

High-throughput

0.602

High

680696

HS104
Heat shock protein 104

2

1

High-throughput

0.601

High

756745

FAF1
Protein FAF1

2

0

Small-scale

0.585

High

756746

DIM1
Dimethyladenosine transferase

2

0

High-throughput

0.585

High

756792

ESF1
Pre-rRNA-processing protein ESF1

2

0

High-throughput

0.585

High

756799

CMS1
Protein CMS1

2

0

High-throughput

0.585

High

756800

RCL1
RNA 3'-terminal phosphate cyclase-like protein

2

0

High-throughput

0.585

High

756820

PNO1
Pre-rRNA-processing protein PNO1

2

0

High-throughput

0.585

High

593634

DBP4
ATP-dependent RNA helicase HCA4

2

1

High-throughput

0.584

High

756777

HAS1
ATP-dependent RNA helicase HAS1

2

1

Small-scale

0.584

High

756787

UTP21
U3 small nucleolar RNA-associated protein 21

2

2

Small-scale

0.584

High

704338

CBF5
H/ACA ribonucleoprotein complex subunit CBF5

2

0

High-throughput

0.576

High

756738

DPO5
rDNA transcriptional regulator POL5

2

0

High-throughput

0.576

High

664816

BMH1
Protein BMH1

2

0

High-throughput

0.569

High

479741

RS4A
Small ribosomal subunit protein eS4A

2

0

High-throughput

0.559

High

481507

RS11B
Small ribosomal subunit protein uS17B

2

0

High-throughput

0.559

High

630196

RRP43
Exosome complex component RRP43

2

0

High-throughput

0.559

High

630485

RRP7
Ribosomal RNA-processing protein 7

2

0

High-throughput

0.559

High

634598

KRR1
KRR1 small subunit processome component

2

0

High-throughput

0.559

High

710879

URB1
Nucleolar pre-ribosomal-associated protein 1

2

0

Small-scale

0.559

High

756734

UTP9
U3 small nucleolar RNA-associated protein 9

2

0

High-throughput

0.559

High

756751

MTR4
ATP-dependent RNA helicase DOB1

2

0

Small-scale

0.559

High

756766

CSL4
Exosome complex component CSL4

2

0

High-throughput

0.559

High

756810

RRP6
Exosome complex exonuclease RRP6

2

0

High-throughput

0.559

High

754958

RRP4
Exosome complex component RRP4

2

0

High-throughput

0.547

High

756769

APJ1
J domain-containing protein APJ1

2

0

High-throughput

0.547

High

613692

RS3A2
Small ribosomal subunit protein eS1B

1

1

High-throughput

0.536

High

633945

GBP2
Serine/arginine

1

1

High-throughput

0.536

High

676044

XPO1
Exportin-1

1

1

High-throughput

0.536

High

756772

UBP3
Ubiquitin carboxyl-terminal hydrolase 3

1

1

High-throughput

0.536

High

511280

SSB1
Ribosome-associated molecular chaperone SSB1

2

0

High-throughput

0.528

High

756758

PRP43
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

1

0

High-throughput

0.513

High

756750

NET1
Nucleolar protein NET1

1

0

High-throughput

0.493

High

562231

PFKA1
ATP-dependent 6-phosphofructokinase subunit alpha

1

1

High-throughput

0.489

High

636618

CDC48
Cell division control protein 48

1

0

High-throughput

0.479

High

756749

RRP41
Exosome complex component SKI6

1

2

High-throughput

0.479

High

756757

MSN5
Protein MSN5

1

1

Small-scale

0.479

High

756761

RRP46
Exosome complex component RRP46

1

2

High-throughput

0.479

High

756767

UBP10
Ubiquitin carboxyl-terminal hydrolase 10

1

1

High-throughput

0.479

High

756785

RRP45
Exosome complex component RRP45

1

2

High-throughput

0.479

High

756786

UTP13
U3 small nucleolar RNA-associated protein 13

1

1

High-throughput

0.479

High

756812

RRP42
Exosome complex component RRP42

1

2

High-throughput

0.479

High

413500

RS14A
Small ribosomal subunit protein uS11A

1

0

High-throughput

0.458

High

480098

RS6A
Small ribosomal subunit protein eS6A

1

0

High-throughput

0.458

High

606639

RPC2
DNA-directed RNA polymerase III subunit RPC2

1

0

High-throughput

0.458

High

631873

RS2
Small ribosomal subunit protein uS5

1

0

High-throughput

0.458

High

662195

TF2B
Transcription initiation factor IIB

1

0

High-throughput

0.458

High

688236

RPC3
DNA-directed RNA polymerase III subunit RPC3

1

0

High-throughput

0.458

High

698796

GSP1
GTP-binding nuclear protein GSP1/CNR1

1

0

Small-scale

0.458

High

711035

UTP11
U3 small nucleolar RNA-associated protein 11

1

0

High-throughput

0.458

High

730792

CENPA
Histone H3-like centromeric protein CSE4

1

0

High-throughput

0.458

High

733563

RL1D1
Ribosome biogenesis protein UTP30

1

0

High-throughput

0.458

High

734833

SYYC
Tyrosine--tRNA ligase, cytoplasmic

1

0

Small-scale

0.458

High

753135

DBP8
ATP-dependent RNA helicase DBP8

1

0

High-throughput

0.458

High

755169

LRP1
Exosome complex protein LRP1

1

0

High-throughput

0.458

High

756735

RRP8
25S rRNA

1

0

High-throughput

0.458

High

756741

LCP5
U3 small nucleolar ribonucleoprotein protein LCP5

1

0

High-throughput

0.458

High

756742

UTP18
U3 small nucleolar RNA-associated protein 18

1

0

High-throughput

0.458

High

756743

RRT14
Regulator of rDNA transcription protein 14

1

0

High-throughput

0.458

High

756744

UTP25
U3 small nucleolar RNA-associated protein 25

1

0

High-throughput

0.458

High

756748

ROK1
ATP-dependent RNA helicase ROK1

1

0

High-throughput

0.458

High

756752

NOP9
Nucleolar protein 9

1

0

Small-scale

0.458

High

756754

NOL10
Ribosome biogenesis protein ENP2

1

0

High-throughput

0.458

High

756755

MTR3
Exosome complex component MTR3

1

0

High-throughput

0.458

High

756763

MPP6
M-phase phosphoprotein 6 homolog

1

0

High-throughput

0.458

High

756765

ESF2
Pre-rRNA-processing protein ESF2

1

0

High-throughput

0.458

High

756770

IMP4
U3 small nucleolar ribonucleoprotein protein IMP4

1

0

High-throughput

0.458

High

756771

ORC1
Origin recognition complex subunit 1

1

0

High-throughput

0.458

High

756776

TOM1
E3 ubiquitin-protein ligase TOM1

1

0

High-throughput

0.458

High

756783

FCF1
rRNA-processing protein FCF1

1

0

High-throughput

0.458

High

756784

HRQ1
ATP-dependent helicase HRQ1

1

0

Small-scale

0.458

High

756789

SGD1
Suppressor of glycerol defect protein 1

1

0

High-throughput

0.458

High

756790

MMS22
E3 ubiquitin-protein ligase substrate receptor MMS22

1

0

High-throughput

0.458

High

756795

BFR2
Protein BFR2

1

0

High-throughput

0.458

High

756801

RRP44
Exosome complex exonuclease DIS3

1

0

High-throughput

0.458

High

756803

RRP40
Exosome complex component RRP40

1

0

High-throughput

0.458

High

756804

SGO1
Shugoshin

1

0

High-throughput

0.458

High

756805

UTP16
U3 small nucleolar RNA-associated protein 16

1

0

High-throughput

0.458

High

756806

NCBP2
Nuclear cap-binding protein subunit 2

1

0

High-throughput

0.458

High

756808

FCF2
rRNA-processing protein FCF2

1

0

High-throughput

0.458

High

756809

SAS10
Something about silencing protein 10

1

0

High-throughput

0.458

High

756814

RRP36
rRNA biogenesis protein RRP36

1

0

High-throughput

0.458

High

756816

SMC6
Structural maintenance of chromosomes protein 6

1

0

High-throughput

0.458

High

756818

EFG1P
rRNA-processing protein EFG1

1

0

High-throughput

0.458

High

562380

PFKA2
ATP-dependent 6-phosphofructokinase subunit beta

1

1

High-throughput

0.457

High

694681

HSP7F
Heat shock protein homolog SSE1

1

2

High-throughput

0.445

High

695963

HSP79
Heat shock protein homolog SSE2

1

2

High-throughput

0.445

High

356471

H4
Histone H4

1

0

High-throughput

0.426

High

376783

PABP
Polyadenylate-binding protein, cytoplasmic and nuclear

1

0

High-throughput

0.426

High

491192

HSP71
Heat shock protein SSA1

1

0

High-throughput

0.426

High

733821

RPF2
Ribosome biogenesis protein RPF2

1

0

High-throughput

0.426

High

705163

HSP78
Heat shock protein 78, mitochondrial

1

1

High-throughput

0.407

High

417580

PHSG
Glycogen phosphorylase

1

0

High-throughput

0.279

Low

596640

ODO1
2-oxoglutarate dehydrogenase, mitochondrial

1

0

High-throughput

0.279

Low

681323

TPS2
Trehalose-phosphatase

1

0

High-throughput

0.279

Low

753206

6PGD1
6-phosphogluconate dehydrogenase, decarboxylating 1

1

0

High-throughput

0.279

Low

756740

SCS2
Vesicle-associated membrane protein-associated protein SCS2

1

0

High-throughput

0.279

Low

756764

BRE5
UBP3-associated protein BRE5

1

0

High-throughput

0.279

Low

342014

ATPB
ATP synthase subunit beta, mitochondrial

1

0

High-throughput

0.261

Low

421635

FAS1
Fatty acid synthase subunit beta

1

0

High-throughput

0.261

Low

588070

HSP60
Heat shock protein 60, mitochondrial

1

0

High-throughput

0.261

Low

604407

CLH
Clathrin heavy chain

1

0

High-throughput

0.261

Low

756802

THI20
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase THI20

1

0

High-throughput

0.261

Low

471051

RS22A
Small ribosomal subunit protein uS8A

1

0

High-throughput

0.249

Low

524297

CAF20
Cap-associated protein CAF20

1

0

High-throughput

0.249

Low

649890

CDC15
Cell division control protein 15

1

0

High-throughput

0.249

Low

700887

SMY2
Protein SMY2

1

0

High-throughput

0.249

Low

756736

TEM1
Protein TEM1

1

0

High-throughput

0.249

Low

756737

LAA1
AP-1 accessory protein LAA1

1

0

High-throughput

0.249

Low

756756

RS12
Small ribosomal subunit protein eS12

1

0

High-throughput

0.249

Low

756759

EIF2A
Eukaryotic translation initiation factor 2A

1

0

High-throughput

0.249

Low

756773

RS15
Small ribosomal subunit protein uS19

1

0

High-throughput

0.249

Low

756798

VAM6
Vacuolar morphogenesis protein 6

1

0

High-throughput

0.249

Low

368050

EF1A
Elongation factor 1-alpha

1

0

High-throughput

0.232

Low

543713

HSC82
ATP-dependent molecular chaperone HSC82

1

0

High-throughput

0.232

Low

756796

SWA2
Auxilin-like clathrin uncoating factor SWA2

1

0

High-throughput

0.232

Low


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Last updated: 15 Jul 2024