HitPredict

Interactor 1: RPD3B (Q39212)
DNA-directed RNA polymerases IV and V subunit 3B (DNA-directed RNA polymerase II 36 kDa polypeptide B) (DNA-directed RNA polymerase II subunit RPB3-B) (RNA polymerase II subunit 3-B) (RNA polymerase II subunit B3-B)
Gene: NRPD3B

Interactor 2: NRPE1 (Q5D869)
DNA-directed RNA polymerase V subunit 1 (DNA-directed RNA polymerase D subunit 1b) (AtNRPD1b) (Nuclear RNA polymerase D 1b) (DNA-directed RNA polymerase E subunit 1) (Nuclear RNA polymerase E 1) (EC 2.7.7.6) (Protein DEFECTIVE IN MERISTEM SILENCING 5) (Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3) (Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1) (RNA polymerase IV subunit 1) (POL IV 1)
Gene: NRPE1

Species: Arabidopsis thaliana

Source: biogrid

Category: Small-scale

Confidence: High

Method score Annotation score Interaction score
0.38 1.00 0.618

The method score is based on:

Property Details
Experiments 25561521
Identification Methods affinity chromatography technology
Interaction Type physical association

The annotation score is based on:

Property Details
Interacting Pfam domains RNA_pol_L~RNA_pol_Rpb1_2, RNA_pol_L~RNA_pol_Rpb1_3, RNA_pol_L~RNA_pol_Rpb1_5
Common GO terms GO:0000418 - RNA polymerase IV complex
GO:0000419 - RNA polymerase V complex
GO:0001055 - RNA polymerase II activity
GO:0003677 - DNA binding
GO:0005665 - RNA polymerase II, core complex
Homologous interactions 17

Homologous interactions

Color coding for hit scores

1 319
At

1 1976
+ At
+ Hs
+ Hs
+ Hs
+ Bt
+ Hs
+ Sc
+ Sc
+ At
+ At
+ Hv
+ Hs
+ Sp
+ Sc
+ Sc
+ Hs
+ Sc

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Last updated: 15 Jul 2024