HitPredict

Interactor 1: RPB9A (Q6NLH0)
DNA-directed RNA polymerases II, IV and V subunit 9A
Gene: NRPB9A

Interactor 2: NRPD1 (Q9LQ02)
DNA-directed RNA polymerase IV subunit 1 (DNA-directed RNA polymerase D subunit 1) (AtNRPD1a) (Nuclear RNA polymerase D 1a) (EC 2.7.7.6) (Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 3) (Protein SILENCING DEFECTIVE 4) (Protein SILENCING MOVEMENT DEFICIENT 2) (RNA polymerase IV subunit 1a) (POL IV 1a)
Gene: NRPD1

Species: Arabidopsis thaliana

Source: biogrid

Category: Small-scale

Confidence: High

Method score	Annotation score	Interaction score
0.38	1.00	0.618

Property	Details
Experiments	21811420
Identification Methods	affinity chromatography technology
Interaction Type	physical association

Property	Details
Interacting Pfam domains	RNA_pol_Rpb1_2~TFIIS_C, RNA_pol_Rpb1_3~TFIIS_C, RNA_pol_Rpb1_4~TFIIS_C
Common GO terms	GO:0005665 - RNA polymerase II, core complex
Homologous interactions	19

Homologous interactions

Color coding for hit scores

	1 114 At			1 1453
+	At
		1226059 RPB9B_ARATH (1-114): 7.09e-51: 158: 92.98		NRPD1_ARATH (1-1453): 0: 2047: 100.00
+	At
		1125367 RPB9A_ARATH (1-114): 2.98e-51: 159: 100.00		NRPE1_ARATH (2-1283): 0: 1090: 25.00
+	At
		1125369 RPB9B_ARATH (1-114): 7.09e-51: 158: 92.98		NRPE1_ARATH (2-1283): 0: 1090: 25.00
+	Dm
		375646 RPB9_DROME (4-114): 8.65e-48: 151: 62.50		RPB1_DROME (11-893): 0: 839: 22.60
+	Sp
		251735 RPB9_SCHPO (1-114): 6.48e-36: 120: 46.96		RPB1_SCHPO (10-906): 0: 789: 22.30
+	Sc
		375304 RPB9_YEAST (1-113): 2.67e-37: 124: 46.49		RPB1_YEAST (11-931): 0: 755: 22.54
+	Hs
		156000 RPB9_HUMAN (4-114): 1.14e-46: 147: 63.39		RPC1_HUMAN (15-955): 0: 724: 22.58
+	Hs
		156085 RPC10_HUMAN (3-114): 9.92e-37: 122: 32.74		RPC1_HUMAN (15-955): 0: 724: 22.58
+	Sc
		375584 RPB9_YEAST (1-113): 2.67e-37: 124: 46.49		RPC1_YEAST (15-868): 0: 690: 22.11
+	Sc
		375210 TFS2_YEAST (31-113): 2.69e-09: 54.7: 20.24		RPB1_YEAST (11-931): 0: 755: 22.54
+	Sc
		375628 RPC10_YEAST (3-114): 1.6e-31: 109: 29.31		RPC1_YEAST (15-868): 0: 690: 22.11
+	Hs
		156075 RPA12_HUMAN (2-114): 6.73e-18: 74.7: 21.05		RPC1_HUMAN (15-955): 0: 724: 22.58
+	Hs
		317084 RPB9_HUMAN (4-114): 1.14e-46: 147: 63.39		RPA1_HUMAN (280-873): 4.73e-167: 548: 20.92
+	Hs
		317191 RPC10_HUMAN (3-114): 9.92e-37: 122: 32.74		RPA1_HUMAN (280-873): 4.73e-167: 548: 20.92
+	Hs
		317173 RPA12_HUMAN (2-114): 6.73e-18: 74.7: 21.05		RPA1_HUMAN (280-873): 4.73e-167: 548: 20.92
+	Bt
		102292 RPB9_BOVIN (4-114): 8.99e-47: 148: 63.39		RPB1_BOVIN (873-1296): 1.48e-13: 78.3: 18.99
+	Hs
		624795 RPB9_HUMAN (4-114): 1.14e-46: 147: 63.39		RPB1_HUMAN (873-1296): 1.48e-13: 78.3: 18.99
+	Hs
		625076 RPA12_HUMAN (2-114): 6.73e-18: 74.7: 21.05		RPB1_HUMAN (873-1296): 1.48e-13: 78.3: 18.99
+	Sc
		501339 RPA12_YEAST (4-113): 4.24e-09: 52: 19.01		RPA1_YEAST (11-132): 2.26e-11: 71: 23.36