HitPredict

Interactor 1: LSM5 (P40089)
U6 snRNA-associated Sm-like protein LSm5
Gene: LSM5

Interactor 2: LSM3 (P57743)
U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)
Gene: LSM3

Species: Saccharomyces cerevisiae S288C

Source: mint

Category: Small-scale

Confidence: High

Method score Annotation score Interaction score
0.94 1.00 0.972

The method score is based on:

Property Details
Experiments 10428970, 10747033, 10900456, 18719252, 16554755, 18329667, 19740761, 37968396, 20108977
Identification Methods two hybrid, biochemical, affinity chromatography technology, pull down, tandem affinity purification
Interaction Type physical association, direct interaction

The annotation score is based on:

Property Details
Interacting Pfam domains LSM~LSM
Common GO terms GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000398 - mRNA splicing, via spliceosome
GO:0000932 - P-body
GO:0003723 - RNA binding
GO:0005634 - nucleus
and 9 others

more...
Homologous interactions 17

Homologous interactions

Color coding for hit scores

1 93
Sc

1 89
+ Sc
+ Sc
+ Sc
+ Sc
+ Hs
+ Hs
+ Hs
+ Hs
+ Mm
+ Dm
+ Sp
+ Ce
+ Hs
+ Dm
+ Hs
+ Hs
+ Dm

Service provided by Combinatics, Japan

Last updated: 15 Jul 2024