Protein: RTR1
RNA polymerase II subunit B1 CTD phosphatase RTR1 (EC 3.1.3.16) (RNA polymerase II-associated protein 2 homolog RTR1) (Regulator of transcription 1)

Gene: RTR1
Organism: Saccharomyces cerevisiae S288C
Interactions: 50
UniProt ID: P40084

Gene Ontology (top 5):
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0006366 - transcription by RNA polymerase II
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0017018 - myosin phosphatase activity

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

375407

RPB1
DNA-directed RNA polymerase II subunit RPB1

8

3

Small-scale

0.967

High

593145

RPAB1
DNA-directed RNA polymerases I, II, and III subunit RPABC1

3

1

Small-scale

0.827

High

558082

RPB3
DNA-directed RNA polymerase II subunit RPB3

9

2

Small-scale

0.750

High

768158

GPN1
GPN-loop GTPase 1

5

3

Small-scale

0.713

High

440041

RPB2
DNA-directed RNA polymerase II subunit RPB2

5

3

Small-scale

0.709

High

710014

RPB7
DNA-directed RNA polymerase II subunit RPB7

5

2

Small-scale

0.702

High

593317

RPAB3
DNA-directed RNA polymerases I, II, and III subunit RPABC3

3

1

Small-scale

0.656

High

593069

RPB4
DNA-directed RNA polymerase II subunit RPB4

3

1

Small-scale

0.640

High

593233

RPAB2
DNA-directed RNA polymerases I, II, and III subunit RPABC2

3

1

Small-scale

0.640

High

604684

RPAB5
DNA-directed RNA polymerases I, II, and III subunit RPABC5

3

1

Small-scale

0.640

High

655563

RPB9
DNA-directed RNA polymerase II subunit RPB9

3

2

Small-scale

0.640

High

757133

RPB11
DNA-directed RNA polymerase II subunit RPB11

3

2

Small-scale

0.640

High

768153

RPAB4
DNA-directed RNA polymerases I, II, and III subunit RPABC4

2

1

Small-scale

0.584

High

768162

GPN3
GPN-loop GTPase 3

2

3

Small-scale

0.576

High

650303

SPT5
Transcription elongation factor SPT5

2

0

High-throughput

0.559

High

701331

SPT4
Transcription elongation factor SPT4

2

0

High-throughput

0.559

High

676092

XPO1
Exportin-1

1

2

High-throughput

0.536

High

412986

KAPB
cAMP-dependent protein kinase type 2

1

0

High-throughput

0.513

High

424545

PYR1
Multifunctional protein URA2

1

0

High-throughput

0.513

High

539254

YAK1
Dual specificity protein kinase YAK1

1

1

High-throughput

0.501

High

768160

TDA1
Serine/threonine-protein kinase TDA1

1

1

High-throughput

0.501

High

768161

CTK1
CTD kinase subunit alpha

1

1

High-throughput

0.501

High

768167

PKH2
Serine/threonine-protein kinase PKH2

1

2

High-throughput

0.501

High

514565

BIK1
Nuclear fusion protein BIK1

1

0

High-throughput

0.493

High

614672

KC11
Casein kinase I homolog 1

1

0

High-throughput

0.480

High

648170

KCC1
Calcium/calmodulin-dependent protein kinase I

1

0

High-throughput

0.480

High

691197

MKK1
MAP kinase kinase MKK1/SSP32

1

0

High-throughput

0.480

High

698350

ELM1
Serine/threonine-protein kinase ELM1

1

0

High-throughput

0.480

High

768154

CTK2
CTD kinase subunit beta

1

0

High-throughput

0.480

High

768156

IKS1
Probable serine/threonine-protein kinase IKS1

1

0

High-throughput

0.480

High

662356

TF2B
Transcription initiation factor IIB

1

1

High-throughput

0.479

High

768155

SET2
Histone-lysine N-methyltransferase, H3 lysine-36 specific

1

1

High-throughput

0.479

High

659793

SBA1
Co-chaperone protein SBA1

1

0

Small-scale

0.460

High

698820

GSP1
GTP-binding nuclear protein GSP1/CNR1

1

0

Small-scale

0.460

High

588990

TYR1
Prephenate dehydrogenase [NADP(+)]

1

0

Small-scale

0.458

High

715688

TAF14
Transcription initiation factor TFIID subunit 14

1

0

High-throughput

0.458

High

761951

DHH1
ATP-dependent RNA helicase DHH1

1

0

Small-scale

0.458

High

768157

PTK2
Serine/threonine-protein kinase PTK2/STK2

1

0

High-throughput

0.458

High

768163

RSC3
Chromatin structure-remodeling complex protein RSC3

1

0

High-throughput

0.458

High

768164

CDC73
Cell division control protein 73

1

0

High-throughput

0.458

High

768165

ASR1
Alcohol-sensitive RING finger protein 1

1

0

High-throughput

0.458

High

768166

IWR1
RNA polymerase II nuclear localization protein IWR1

1

0

High-throughput

0.458

High

768159

PKH3
Serine/threonine-protein kinase PKH3

1

2

High-throughput

0.457

High

491373

HSP71
Heat shock protein SSA1

1

2

High-throughput

0.445

High

494089

HSP72
Heat shock protein SSA2

1

2

High-throughput

0.445

High

511492

SSB1
Ribosome-associated molecular chaperone SSB1

1

1

High-throughput

0.445

High

694791

HSP7F
Heat shock protein homolog SSE1

1

3

High-throughput

0.445

High

628113

SIS1
Protein SIS1

1

0

High-throughput

0.426

High

733836

RPF2
Ribosome biogenesis protein RPF2

2

0

High-throughput

0.324

High

692799

SPT16
FACT complex subunit SPT16

1

0

High-throughput

0.249

Low


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Last updated: 15 Jul 2024