Protein: RRP40
Exosome complex component RRP40 (Ribosomal RNA-processing protein 40)

Gene: RRP40
Organism: Saccharomyces cerevisiae S288C
Interactions: 76
UniProt ID: Q08285

Gene Ontology (top 5):
GO:0000176 - nuclear exosome (RNase complex)
GO:0000177 - cytoplasmic exosome (RNase complex)
GO:0000178 - exosome (RNase complex)
GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 - RNA binding

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

860820

RRP46
Exosome complex component RRP46

9

11

Small-scale

0.970

High

809597

RRP41
Exosome complex component SKI6

7

14

Small-scale

0.962

High

984318

RRP45
Exosome complex component RRP45

6

11

Small-scale

0.945

High

755006

RRP4
Exosome complex component RRP4

3

7

High-throughput

0.855

High

864441

MPP6
M-phase phosphoprotein 6 homolog

3

0

Small-scale

0.813

High

816983

MTR3
Exosome complex component MTR3

3

0

High-throughput

0.811

High

630279

RRP43
Exosome complex component RRP43

3

0

High-throughput

0.803

High

993677

RRP44
Exosome complex exonuclease DIS3

11

4

Small-scale

0.756

High

994586

RRP6
Exosome complex exonuclease RRP6

11

1

Small-scale

0.754

High

865429

CSL4
Exosome complex component CSL4

7

1

Small-scale

0.741

High

994581

SKI7
Superkiller protein 7

6

1

Small-scale

0.730

High

994588

RRP42
Exosome complex component RRP42

3

11

Small-scale

0.656

High

748728

ENP1
Essential nuclear protein 1

3

0

High-throughput

0.613

High

979056

DHR1
Probable ATP-dependent RNA helicase DHR1

3

0

High-throughput

0.613

High

982901

RRP5
rRNA biogenesis protein RRP5

1

0

High-throughput

0.586

High

634798

KRR1
KRR1 small subunit processome component

2

0

High-throughput

0.559

High

755210

LRP1
Exosome complex protein LRP1

2

0

High-throughput

0.559

High

792611

UTP10
U3 small nucleolar RNA-associated protein 10

2

0

High-throughput

0.559

High

979734

UTP14
U3 small nucleolar RNA-associated protein 14

2

0

High-throughput

0.559

High

987674

NOC4
Nucleolar complex protein 4

2

0

High-throughput

0.559

High

512991

SSB1
Ribosome-associated molecular chaperone SSB1

2

1

High-throughput

0.552

High

769658

SSB2
Ribosome-associated molecular chaperone SSB2

2

1

High-throughput

0.552

High

495144

HSP72
Heat shock protein SSA2

2

0

High-throughput

0.528

High

635661

PWP2
Periodic tryptophan protein 2

1

1

High-throughput

0.479

High

707152

DCA13
Protein SOF1

1

2

High-throughput

0.479

High

716211

SKI2
Antiviral helicase SKI2

1

3

High-throughput

0.479

High

810936

MTR4
ATP-dependent RNA helicase DOB1

1

3

High-throughput

0.479

High

973688

UTP17
NET1-associated nuclear protein 1

1

5

High-throughput

0.479

High

978643

UTP5
U3 small nucleolar RNA-associated protein 5

1

2

High-throughput

0.479

High

979255

UTP15
U3 small nucleolar RNA-associated protein 15

1

1

High-throughput

0.479

High

985431

UTP13
U3 small nucleolar RNA-associated protein 13

1

2

High-throughput

0.479

High

985825

UTP21
U3 small nucleolar RNA-associated protein 21

1

2

High-throughput

0.479

High

987612

RRP9
Ribosomal RNA-processing protein 9

1

1

High-throughput

0.479

High

988647

UTP4
U3 small nucleolar RNA-associated protein 4

1

1

High-throughput

0.479

High

994587

UTP12
U3 small nucleolar RNA-associated protein 12

1

2

High-throughput

0.479

High

994589

NOP56
Nucleolar protein 56

1

1

High-throughput

0.479

High

994590

NOP58
Nucleolar protein 58

1

1

High-throughput

0.479

High

746606

OLA1
Obg-like ATPase 1

1

1

High-throughput

0.470

High

571921

SKI3
Superkiller protein 3

1

0

High-throughput

0.458

High

630553

RRP7
Ribosomal RNA-processing protein 7

1

0

High-throughput

0.458

High

663518

TF2B
Transcription initiation factor IIB

1

0

High-throughput

0.458

High

711084

UTP11
U3 small nucleolar RNA-associated protein 11

1

0

High-throughput

0.458

High

715997

UTP20
U3 small nucleolar RNA-associated protein 20

1

0

High-throughput

0.458

High

731398

YO062
Uncharacterized protein YOR062C

1

0

High-throughput

0.458

High

756803

UTP9
U3 small nucleolar RNA-associated protein 9

1

0

High-throughput

0.458

High

767435

UTP7
U3 small nucleolar RNA-associated protein 7

1

0

High-throughput

0.458

High

772692

UTP18
U3 small nucleolar RNA-associated protein 18

1

0

High-throughput

0.458

High

774290

RRT14
Regulator of rDNA transcription protein 14

1

0

High-throughput

0.458

High

775400

FAF1
Protein FAF1

1

0

High-throughput

0.458

High

784532

DIM1
Dimethyladenosine transferase

1

0

High-throughput

0.458

High

811571

MPP10
U3 small nucleolar RNA-associated protein MPP10

1

0

High-throughput

0.458

High

816918

NOL10
Ribosome biogenesis protein ENP2

1

0

High-throughput

0.458

High

860759

UTP22
U3 small nucleolar RNA-associated protein 22

1

0

High-throughput

0.458

High

861042

UTP8
U3 small nucleolar RNA-associated protein 8

1

0

High-throughput

0.458

High

866071

NAT10
RNA cytidine acetyltransferase

1

0

High-throughput

0.458

High

866628

IMP4
U3 small nucleolar ribonucleoprotein protein IMP4

1

0

High-throughput

0.458

High

970480

UTP6
U3 small nucleolar RNA-associated protein 6

1

0

High-throughput

0.458

High

983778

FCF1
rRNA-processing protein FCF1

1

0

High-throughput

0.458

High

986761

NEP1
Ribosomal RNA small subunit methyltransferase NEP1

1

0

High-throughput

0.458

High

988479

BFR2
Protein BFR2

1

0

High-throughput

0.458

High

993366

RCL1
RNA 3'-terminal phosphate cyclase-like protein

1

0

High-throughput

0.458

High

994582

UTP16
U3 small nucleolar RNA-associated protein 16

1

0

High-throughput

0.458

High

994583

BMS1
Ribosome biogenesis protein BMS1

1

0

High-throughput

0.458

High

994584

FCF2
rRNA-processing protein FCF2

1

0

High-throughput

0.458

High

994585

SAS10
Something about silencing protein 10

1

0

High-throughput

0.458

High

994591

RRP12
Ribosomal RNA-processing protein 12

1

0

High-throughput

0.458

High

994592

NOP14
Nucleolar complex protein 14

1

0

High-throughput

0.458

High

411099

PDC1
Pyruvate decarboxylase isozyme 1

1

0

High-throughput

0.426

High

520651

YPK1
Serine/threonine-protein kinase YPK1

1

0

High-throughput

0.426

High

854690

PFD6
Prefoldin subunit 6

1

0

High-throughput

0.426

High

972925

IMA1
Importin subunit alpha

1

0

High-throughput

0.426

High

865247

IST1
Vacuolar protein sorting-associated protein IST1

2

0

High-throughput

0.307

High

598685

OSM1
Fumarate reductase 2

1

0

High-throughput

0.269

Low

748324

SDS24
Protein SDS24

1

0

High-throughput

0.249

Low

964547

ARG56
Protein ARG5,6, mitochondrial [Cleaved into: N-acetyl-gamma-glutamyl-phosphate reductase

1

0

High-throughput

0.249

Low

865935

PFD4
Prefoldin subunit 4

1

0

High-throughput

0.232

Low


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Last updated: 15 Jul 2024