HitPredict

Interactor 1: Q9SUN5 (Q9SUN5)
Small nuclear ribonucleoprotein-associated protein
Gene: SMB

Interactor 2: SMD1B (Q9SY09)
Small nuclear ribonucleoprotein SmD1b (AtSmD1-b)
Gene: SMD1B

Species: Arabidopsis thaliana

Source: intact

Category: High-throughput

Confidence: High

Method score	Annotation score	Interaction score
0.34	1.00	0.590

Property	Details
Experiments	21798944
Identification Methods	two hybrid array
Interaction Type	physical association

Property	Details
Interacting Pfam domains	LSM~LSM
Common GO terms	GO:0005682 - U5 snRNP GO:0005685 - U1 snRNP GO:0005686 - U2 snRNP GO:0005687 - U4 snRNP GO:0071013 - catalytic step 2 spliceosome
Homologous interactions	16

Homologous interactions

Color coding for hit scores

	1 257 At			1 116
+	Hs
		539197 RSMB_HUMAN (1-175): 1.17e-30: 115: 53.41		LSM2_HUMAN (1-93): 2.64e-35: 118: 27.37
+	Hs
		539204 RSMB_HUMAN (1-175): 1.17e-30: 115: 53.41		LSM4_HUMAN (1-89): 7.47e-35: 118: 24.44
+	Hs
		538894 RSMB_HUMAN (1-175): 1.17e-30: 115: 53.41		SMD1_HUMAN (1-96): 2.88e-34: 116: 73.96
+	Hs
		538896 RSMB_HUMAN (1-175): 1.17e-30: 115: 53.41		SMD3_HUMAN (2-109): 4.61e-32: 110: 23.15
+	At
		1323437 Q9FI15_ARATH (1-226): 1.32e-26: 105: 79.74		SMD1B_ARATH (1-99): 1.5e-35: 119: 100.00
+	Hs
		928046 RSMN_HUMAN (1-168): 3.26e-25: 101: 53.85		LSM2_HUMAN (1-93): 2.64e-35: 118: 27.37
+	Hs
		928049 RSMN_HUMAN (1-168): 3.26e-25: 101: 53.85		LSM4_HUMAN (1-89): 7.47e-35: 118: 24.44
+	Hs
		912265 RSMN_HUMAN (1-168): 3.26e-25: 101: 53.85		SMD1_HUMAN (1-96): 2.88e-34: 116: 73.96
+	Hs
		538890 RSMB_HUMAN (1-175): 1.17e-30: 115: 53.41		RUXF_HUMAN (3-69): 1.24e-27: 98.5: 28.36
+	Hs
		912611 RSMN_HUMAN (1-168): 3.26e-25: 101: 53.85		SMD3_HUMAN (2-109): 4.61e-32: 110: 23.15
+	Dm
		218359 RSMB_DROME (1-199): 1.09e-23: 96.6: 49.01		SMD3_DROME (2-109): 1.47e-32: 113: 20.37
+	Sc
		766943 RSMB_YEAST (1-88): 3.65e-25: 100: 40.82		SMD1_YEAST (1-116): 9.27e-31: 108: 37.06
+	Sc
		746294 RSMB_YEAST (1-88): 3.65e-25: 100: 40.82		LSM2_YEAST (1-87): 7.56e-29: 101: 29.21
+	Sc
		766915 RSMB_YEAST (1-88): 3.65e-25: 100: 40.82		SMD3_YEAST (2-89): 1.91e-28: 101: 28.41
+	Hs
		911801 RSMN_HUMAN (1-168): 3.26e-25: 101: 53.85		RUXF_HUMAN (3-69): 1.24e-27: 98.5: 28.36
+	Sc
		766909 RSMB_YEAST (1-88): 3.65e-25: 100: 40.82		LSM4_YEAST (1-76): 3.73e-15: 69.3: 27.59