HitPredict

Interactor 1: SMD1 (P62314)
Small nuclear ribonucleoprotein Sm D1 (Sm-D1) (Sm-D autoantigen) (snRNP core protein D1)
Gene: SNRPD1

Interactor 2: RBM39 (Q14498)
RNA-binding protein 39 (CAPER alpha) (CAPERalpha) (Hepatocellular carcinoma protein 1) (RNA-binding motif protein 39) (RNA-binding region-containing protein 2) (Splicing factor HCC1)
Gene: RBM39

Species: Homo sapiens

Source: intact

Category: Small-scale

Confidence: High

Method score	Annotation score	Interaction score
0.71	0.60	0.656

Property	Details
Experiments	28302793, 35271311, 16051665
Identification Methods	affinity chromatography technology, anti tag coimmunoprecipitation
Interaction Type	physical association, association

Property	Details
Interacting Pfam domains	-
Common GO terms	GO:0003723 - RNA binding GO:0005654 - nucleoplasm GO:0008380 - RNA splicing
Homologous interactions	10

Homologous interactions

Color coding for hit scores

	1 119 Hs			1 530
+	Hs
		1054708 LSM4_HUMAN (1-89): 1.24e-33: 115: 23.33		RBM39_HUMAN (1-530): 2.78e-101: 316: 100.00
+	Hs
		1054694 LSM2_HUMAN (1-88): 7.62e-33: 111: 31.11		RBM39_HUMAN (1-530): 2.78e-101: 316: 100.00
+	Hs
		912633 SMD3_HUMAN (2-102): 1.06e-31: 110: 28.71		RBM39_HUMAN (1-530): 2.78e-101: 316: 100.00
+	Hs
		911835 RUXF_HUMAN (3-69): 8.6e-27: 96.6: 28.36		RBM39_HUMAN (1-530): 2.78e-101: 316: 100.00
+	Hs
		911991 RUXF_HUMAN (3-69): 8.6e-27: 96.6: 28.36		PUF60_HUMAN (141-513): 7.12e-66: 225: 19.41
+	Sc
		376759 LSM2_YEAST (1-87): 1.38e-28: 101: 28.09		PABP_YEAST (40-441): 6.66e-53: 190: 12.17
+	Sc
		376804 LSM4_YEAST (1-76): 3.81e-15: 69.3: 27.59		PABP_YEAST (40-441): 6.66e-53: 190: 12.17
+	Hs
		911843 RUXF_HUMAN (3-69): 8.6e-27: 96.6: 28.36		SF3B4_HUMAN (238-395): 5.66e-23: 103: 22.79
+	Dm
		218382 SMD3_DROME (2-102): 6.25e-32: 111: 24.75		Q9W424_DROME (148-329): 2.25e-15: 79.3: 28.80
+	Hs
		162003 RUXF_HUMAN (3-69): 8.6e-27: 96.6: 28.36		HNRDL_HUMAN (144-309): 3.62e-15: 79.7: 31.93