HitPredict

Interactor 1: RPOD (P00579)
RNA polymerase sigma factor RpoD (Sigma-70)
Gene: RPOD

Interactor 2: RHAR (P09378)
HTH-type transcriptional activator RhaR (L-rhamnose operon transcriptional activator RhaR)
Gene: RHAR

Species: Escherichia coli K-12

Source: intact

Category: Small-scale

Confidence: High

Method score	Annotation score	Interaction score
0.62	0.80	0.709

Property	Details
Experiments	24561554, 15342598
Identification Methods	two hybrid, biochemical, two hybrid array
Interaction Type	direct interaction, physical association

Property	Details
Interacting Pfam domains	HTH_18~Sigma70_r4
Common GO terms	-
Homologous interactions	8

Homologous interactions

Color coding for hit scores

	1 613 Ec			1 282
+	Ec
		365799 RPOD_ECOLI (1-613): 0: 642: 100.00		RHAS_ECOLI (11-276): 1.33e-79: 243: 34.46
+	Ec
		365851 RPOD_ECOLI (1-613): 0: 642: 100.00		YPDC_ECOLI (6-277): 1.79e-65: 208: 22.83
+	Ec
		365822 RPOD_ECOLI (1-613): 0: 642: 100.00		MELR_ECOLI (15-281): 6.96e-62: 199: 18.09
+	Ec
		365818 RPOD_ECOLI (1-613): 0: 642: 100.00		ARAC_ECOLI (39-281): 2.17e-51: 171: 23.41
+	Ec
		365833 RPOD_ECOLI (1-613): 0: 642: 100.00		CHBR_ECOLI (31-280): 4.5e-48: 163: 17.83
+	Ec
		365837 RPOD_ECOLI (1-613): 0: 642: 100.00		GADX_ECOLI (36-281): 5.42e-45: 155: 16.34
+	Ec
		365798 RPOD_ECOLI (1-613): 0: 642: 100.00		ADA_ECOLI (135-276): 2.24e-27: 110: 22.07
+	Ss
		1001883 SIGA_SYNY3 (187-611): 5.19e-86: 276: 37.41		P73364_SYNY3 (145-277): 3.73e-35: 128: 18.05