Protein: RTRAF
RNA transcription, translation and transport factor protein (CLE7 homolog) (CLE) (hCLE)

Gene: RTRAF
Organism: Homo sapiens
Interactions: 196
UniProt ID: Q9Y224

Gene Ontology (top 5):
GO:0000993 - RNA polymerase II complex binding
GO:0003723 - RNA binding
GO:0005634 - nucleus
GO:0005654 - nucleoplasm
GO:0005737 - cytoplasm

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1241276

FA98A
Protein FAM98A

7

2

Small-scale

0.742

High

1266154

DDX1
ATP-dependent RNA helicase DDX1

5

1

Small-scale

0.709

High

1119915

FA98B
Protein FAM98B

5

3

Small-scale

0.703

High

1376971

RTCB
RNA-splicing ligase RtcB homolog

6

0

Small-scale

0.700

High

1376969

RTRAF
RNA transcription, translation and transport factor protein

2

0

Small-scale

0.623

High

1042864

CUL3
Cullin-3

2

4

High-throughput

0.611

High

1313734

ASHWN
Ashwin

2

0

High-throughput

0.595

High

718332

BMI1
Polycomb complex protein BMI-1

2

0

High-throughput

0.585

High

229085

PRKN
E3 ubiquitin-protein ligase parkin

2

1

High-throughput

0.584

High

348266

MYC
Myc proto-oncogene protein

2

1

High-throughput

0.584

High

497825

TAU
Microtubule-associated protein tau

2

0

High-throughput

0.576

High

370737

ESR1
Estrogen receptor

2

2

High-throughput

0.571

High

727100

FUS
RNA-binding protein FUS

2

1

High-throughput

0.571

High

1089476

FA98C
Protein FAM98C

2

3

Small-scale

0.571

High

1327808

RGAP1
Rac GTPase-activating protein 1

2

2

High-throughput

0.571

High

1344848

DISC1
Disrupted in schizophrenia 1 protein

2

0

High-throughput

0.565

High

256160

OBSL1
Obscurin-like protein 1

2

0

High-throughput

0.559

High

554081

RFA2
Replication protein A 32 kDa subunit

2

0

High-throughput

0.559

High

652633

RFA1
Replication protein A 70 kDa DNA-binding subunit

2

0

High-throughput

0.559

High

721806

RFA3
Replication protein A 14 kDa subunit

2

0

High-throughput

0.559

High

1184388

MEPCE
7SK snRNA methylphosphate capping enzyme

2

0

High-throughput

0.559

High

1044283

DYR1A
Dual specificity tyrosine-phosphorylation-regulated kinase 1A

2

0

High-throughput

0.547

High

317381

PCNT
Pericentrin

1

1

High-throughput

0.541

High

804380

NOTC1
Neurogenic locus notch homolog protein 1

1

2

High-throughput

0.536

High

962466

HNRPU
Heterogeneous nuclear ribonucleoprotein U

1

2

High-throughput

0.536

High

1041285

CUL1
Cullin-1

1

4

High-throughput

0.536

High

1041507

CUL2
Cullin-2

1

4

High-throughput

0.536

High

1043643

CUL4B
Cullin-4B

1

4

High-throughput

0.536

High

1085103

DREB
Drebrin

1

1

High-throughput

0.536

High

1272710

CSN5
COP9 signalosome complex subunit 5

1

1

High-throughput

0.536

High

1274082

CUL5
Cullin-5

1

4

High-throughput

0.536

High

1314181

RIOK2
Serine/threonine-protein kinase RIO2

1

1

High-throughput

0.536

High

1357437

G3BP2
Ras GTPase-activating protein-binding protein 2

1

1

High-throughput

0.536

High

1233498

NIN
Ninein

1

0

Small-scale

0.529

High

128668

DNM1L
Dynamin-1-like protein

1

0

High-throughput

0.513

High

133734

NOP56
Nucleolar protein 56

1

0

High-throughput

0.513

High

230935

MAST3
Microtubule-associated serine/threonine-protein kinase 3

1

0

High-throughput

0.513

High

336625

SODC
Superoxide dismutase [Cu-Zn]

1

0

High-throughput

0.513

High

452919

DLDH
Dihydrolipoyl dehydrogenase, mitochondrial

1

0

High-throughput

0.513

High

529926

CFTR
Cystic fibrosis transmembrane conductance regulator

1

0

High-throughput

0.513

High

649830

RL10
Large ribosomal subunit protein uL16

1

0

High-throughput

0.513

High

794183

MATR3
Matrin-3

1

0

High-throughput

0.513

High

813850

CAPZB
F-actin-capping protein subunit beta

1

0

High-throughput

0.513

High

867489

ICLN
Methylosome subunit pICln

1

0

High-throughput

0.513

High

908219

RS16
Small ribosomal subunit protein uS9

1

0

High-throughput

0.513

High

1047004

BYST
Bystin

1

0

High-throughput

0.513

High

1183256

COX15
Heme A synthase COX15

1

0

High-throughput

0.513

High

1202191

CAND1
Cullin-associated NEDD8-dissociated protein 1

1

0

High-throughput

0.513

High

1263585

PSPC1
Paraspeckle component 1

1

0

High-throughput

0.513

High

1291534

THOC1
THO complex subunit 1

1

0

High-throughput

0.513

High

1292408

DCNL1
DCN1-like protein 1

1

0

High-throughput

0.513

High

1376973

MB212
Protein mab-21-like 2

1

0

High-throughput

0.513

High

125798

WWP2
NEDD4-like E3 ubiquitin-protein ligase WWP2

1

1

High-throughput

0.479

High

312678

ARI2
E3 ubiquitin-protein ligase ARIH2

1

1

High-throughput

0.479

High

380031

MYCN
N-myc proto-oncogene protein

1

1

High-throughput

0.479

High

487853

ANDR
Androgen receptor

1

2

High-throughput

0.479

High

551589

TFE2
Transcription factor E2-alpha

1

1

High-throughput

0.479

High

570191

CEBPB
CCAAT/enhancer-binding protein beta

1

1

High-throughput

0.479

High

741106

ZEB1
Zinc finger E-box-binding homeobox 1

1

1

Small-scale

0.479

High

799160

NKX21
Homeobox protein Nkx-2.1

1

1

High-throughput

0.479

High

844292

FXR2
RNA-binding protein FXR2

1

1

High-throughput

0.479

High

903611

WDR5
WD repeat-containing protein 5

1

1

High-throughput

0.479

High

959772

VIGLN
Vigilin

1

1

High-throughput

0.479

High

974702

MECOM
Histone-lysine N-methyltransferase MECOM

1

1

High-throughput

0.479

High

1018202

M4K2
Mitogen-activated protein kinase kinase kinase kinase 2

1

1

High-throughput

0.479

High

1022238

NFX1
Transcriptional repressor NF-X1

1

1

High-throughput

0.479

High

1030559

G3BP1
Ras GTPase-activating protein-binding protein 1

1

1

High-throughput

0.479

High

1119968

RHG29
Rho GTPase-activating protein 29

1

3

High-throughput

0.479

High

1169513

FGD5
FYVE, RhoGEF and PH domain-containing protein 5

1

2

High-throughput

0.479

High

1172311

TRI67
Tripartite motif-containing protein 67

1

1

High-throughput

0.479

High

1176285

ASXL2
Putative Polycomb group protein ASXL2

1

2

High-throughput

0.479

High

1192272

HUWE1
E3 ubiquitin-protein ligase HUWE1

1

1

High-throughput

0.479

High

1192413

YTHD3
YTH domain-containing family protein 3

1

1

High-throughput

0.479

High

1202640

ARHGP
Rho guanine nucleotide exchange factor 25

1

1

High-throughput

0.479

High

1251948

RIN3
Ras and Rab interactor 3

1

1

High-throughput

0.479

High

1269956

ESR2
Estrogen receptor beta

1

2

High-throughput

0.479

High

1281484

FBXW7
F-box/WD repeat-containing protein 7

1

2

Small-scale

0.479

High

1288600

ZBT10
Zinc finger and BTB domain-containing protein 10

1

1

Small-scale

0.479

High

1299220

ARHGH
Rho guanine nucleotide exchange factor 17

1

1

High-throughput

0.479

High

1310553

RIOK1
Serine/threonine-protein kinase RIO1

1

1

High-throughput

0.479

High

1319315

ASXL3
Putative Polycomb group protein ASXL3

1

2

High-throughput

0.479

High

1334050

WDR76
WD repeat-containing protein 76

1

2

High-throughput

0.479

High

1335048

PRD16
Histone-lysine N-methyltransferase PRDM16

1

1

High-throughput

0.479

High

1342847

BRD7
Bromodomain-containing protein 7

1

1

High-throughput

0.479

High

1345235

RHG35
Rho GTPase-activating protein 35

1

1

High-throughput

0.479

High

1376970

FBW1A
F-box/WD repeat-containing protein 1A

1

2

High-throughput

0.479

High

1376974

YTHD2
YTH domain-containing family protein 2

1

1

High-throughput

0.479

High

70717

MYO9A
Unconventional myosin-IXa

1

0

High-throughput

0.458

High

119568

LEG9
Galectin-9

1

0

High-throughput

0.458

High

123105

MEN1
Menin

1

0

High-throughput

0.458

High

124962

EIF3F
Eukaryotic translation initiation factor 3 subunit F

1

0

Small-scale

0.458

High

128346

IF2B3
Insulin-like growth factor 2 mRNA-binding protein 3

1

0

High-throughput

0.458

High

149434

CTRO
Citron Rho-interacting kinase

1

0

High-throughput

0.458

High

214416

SPOP
Speckle-type POZ protein

1

0

High-throughput

0.458

High

245104

BRD4
Bromodomain-containing protein 4

1

0

High-throughput

0.458

High

295414

RECQ4
ATP-dependent DNA helicase Q4

1

0

High-throughput

0.458

High

298893

UFL1
E3 UFM1-protein ligase 1

1

0

High-throughput

0.458

High

303538

HEXI1
Protein HEXIM1

1

0

High-throughput

0.458

High

324686

BAG3
BAG family molecular chaperone regulator 3

1

0

High-throughput

0.458

High

326822

SNAI1
Zinc finger protein SNAI1

1

0

High-throughput

0.458

High

360550

LMNA
Prelamin-A/C [Cleaved into: Lamin-A/C

1

0

High-throughput

0.458

High

375106

RAF1
RAF proto-oncogene serine/threonine-protein kinase

1

0

High-throughput

0.458

High

453714

ROA1
Heterogeneous nuclear ribonucleoprotein A1

1

0

High-throughput

0.458

High

548763

VAV
Proto-oncogene vav

1

0

High-throughput

0.458

High

560016

H12
Histone H1.2

1

0

High-throughput

0.458

High

591153

BTF3
Transcription factor BTF3

1

0

High-throughput

0.458

High

618738

IF4B
Eukaryotic translation initiation factor 4B

1

0

Small-scale

0.458

High

625105

RPB1
DNA-directed RNA polymerase II subunit RPB1

1

0

Small-scale

0.458

High

668447

RBMS1
RNA-binding motif, single-stranded-interacting protein 1

1

0

High-throughput

0.458

High

685115

STIP1
Stress-induced-phosphoprotein 1

1

0

High-throughput

0.458

High

719240

PHB1
Prohibitin 1

1

0

High-throughput

0.458

High

780341

CCNF
Cyclin-F

1

0

High-throughput

0.458

High

786194

LAP2B
Lamina-associated polypeptide 2, isoforms beta/gamma

1

0

High-throughput

0.458

High

824543

NR2C2
Nuclear receptor subfamily 2 group C member 2

1

0

High-throughput

0.458

High

832788

MCM2
DNA replication licensing factor MCM2

1

0

High-throughput

0.458

High

842402

PPT1
Palmitoyl-protein thioesterase 1

1

0

High-throughput

0.458

High

868372

ATX3
Ataxin-3

1

0

High-throughput

0.458

High

897862

ABCE1
ATP-binding cassette sub-family E member 1

1

0

High-throughput

0.458

High

909341

UBE2H
Ubiquitin-conjugating enzyme E2 H

1

0

High-throughput

0.458

High

918156

H4
Histone H4

1

0

High-throughput

0.458

High

927672

1433Z
14-3-3 protein zeta/delta

1

0

High-throughput

0.458

High

932461

ACTC
Actin, alpha cardiac muscle 1

1

0

High-throughput

0.458

High

957222

DAB2
Disabled homolog 2

1

0

Small-scale

0.458

High

970075

KIF23
Kinesin-like protein KIF23

1

0

High-throughput

0.458

High

999227

EP300
Histone acetyltransferase p300

1

0

High-throughput

0.458

High

1018754

CHD3
Chromodomain-helicase-DNA-binding protein 3

1

0

High-throughput

0.458

High

1026382

AIMP2
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2

1

0

High-throughput

0.458

High

1036212

BIRC3
Baculoviral IAP repeat-containing protein 3

1

0

High-throughput

0.458

High

1049187

TRI14
Tripartite motif-containing protein 14

1

0

High-throughput

0.458

High

1049926

UBP2L
Ubiquitin-associated protein 2-like

1

0

High-throughput

0.458

High

1054677

RBM39
RNA-binding protein 39

1

0

High-throughput

0.458

High

1064849

U5S1
116 kDa U5 small nuclear ribonucleoprotein component

1

0

High-throughput

0.458

High

1066891

KIF14
Kinesin-like protein KIF14

1

0

High-throughput

0.458

High

1089589

CPEB4
Cytoplasmic polyadenylation element-binding protein 4

1

0

High-throughput

0.458

High

1109647

LSM12
Protein LSM12

1

0

High-throughput

0.458

High

1189059

PARPT
Protein mono-ADP-ribosyltransferase TIPARP

1

0

High-throughput

0.458

High

1189973

NUFP2
FMR1-interacting protein NUFIP2

1

0

High-throughput

0.458

High

1201772

ZCH18
Zinc finger CCCH domain-containing protein 18

1

0

High-throughput

0.458

High

1221846

SMC5
Structural maintenance of chromosomes protein 5

1

0

High-throughput

0.458

High

1230942

CMTR1
Cap-specific mRNA

1

0

High-throughput

0.458

High

1239348

KDF1
Keratinocyte differentiation factor 1

1

0

High-throughput

0.458

High

1245234

TNIP2
TNFAIP3-interacting protein 2

1

0

High-throughput

0.458

High

1256488

DOT1L
Histone-lysine N-methyltransferase, H3 lysine-79 specific

1

0

High-throughput

0.458

High

1267270

BAP1
Ubiquitin carboxyl-terminal hydrolase BAP1

1

0

High-throughput

0.458

High

1286757

CHM4C
Charged multivesicular body protein 4c

1

0

High-throughput

0.458

High

1294141

DDRGK
DDRGK domain-containing protein 1

1

0

High-throughput

0.458

High

1299491

ZN363
RING finger and CHY zinc finger domain-containing protein 1

1

0

High-throughput

0.458

High

1304838

TBX5
T-box transcription factor TBX5

1

0

High-throughput

0.458

High

1305724

ATX2
Ataxin-2

1

0

High-throughput

0.458

High

1307058

ANM1
Protein arginine N-methyltransferase 1

1

0

High-throughput

0.458

High

1314429

DDA1
DET1- and DDB1-associated protein 1

1

0

High-throughput

0.458

High

1318528

TRI31
E3 ubiquitin-protein ligase TRIM31

1

0

High-throughput

0.458

High

1319137

UBE2O
(E3-independent) E2 ubiquitin-conjugating enzyme

1

0

High-throughput

0.458

High

1327611

TOLIP
Toll-interacting protein

1

0

High-throughput

0.458

High

1331654

PKHA4
Pleckstrin homology domain-containing family A member 4

1

0

High-throughput

0.458

High

1333019

TDRD3
Tudor domain-containing protein 3

1

0

High-throughput

0.458

High

1335240

RC3H2
Roquin-2

1

0

High-throughput

0.458

High

1336059

MET14
N6-adenosine-methyltransferase non-catalytic subunit

1

0

High-throughput

0.458

High

1343808

ANLN
Anillin

1

0

High-throughput

0.458

High

1345461

RAD18
E3 ubiquitin-protein ligase RAD18

1

0

High-throughput

0.458

High

1347320

PIHD1
PIH1 domain-containing protein 1

1

0

High-throughput

0.458

High

1354891

ZRAN1
Ubiquitin thioesterase ZRANB1

1

0

High-throughput

0.458

High

1376972

UBP15
Ubiquitin carboxyl-terminal hydrolase 15

1

0

Small-scale

0.458

High

402637

JUN
Transcription factor Jun

1

1

High-throughput

0.445

High

551319

ITF2
Transcription factor 4

1

1

Small-scale

0.445

High

989202

FMR1
Fragile X messenger ribonucleoprotein 1

1

1

High-throughput

0.445

High

994827

GOGA3
Golgin subfamily A member 3

1

1

Small-scale

0.445

High

1169445

NBEL2
Neurobeachin-like protein 2

1

2

High-throughput

0.445

High

1271216

RBP56
TATA-binding protein-associated factor 2N

1

1

Small-scale

0.445

High

1304800

ZBT18
Zinc finger and BTB domain-containing protein 18

1

1

High-throughput

0.445

High

1346560

DJC11
DnaJ homolog subfamily C member 11

1

1

Small-scale

0.445

High

815940

MTR1A
Melatonin receptor type 1A

1

1

High-throughput

0.439

High

1357007

HECD1
E3 ubiquitin-protein ligase HECTD1

1

3

High-throughput

0.437

High

258252

DNJB6
DnaJ homolog subfamily B member 6

1

0

Small-scale

0.426

High

331113

PAK4
Serine/threonine-protein kinase PAK 4

1

0

High-throughput

0.426

High

657452

ABCD3
ATP-binding cassette sub-family D member 3

1

0

Small-scale

0.426

High

847727

BAP31
B-cell receptor-associated protein 31

1

0

Small-scale

0.426

High

851749

NEK4
Serine/threonine-protein kinase Nek4

1

0

High-throughput

0.426

High

891361

GBRL2
Gamma-aminobutyric acid receptor-associated protein-like 2

1

0

High-throughput

0.426

High

924218

RS27A
Ubiquitin-ribosomal protein eS31 fusion protein

1

0

Small-scale

0.426

High

1047331

CAC1C
Voltage-dependent L-type calcium channel subunit alpha-1C

1

0

High-throughput

0.426

High

1233268

RYBP
RING1 and YY1-binding protein

1

0

High-throughput

0.426

High

1314913

SSBP3
Single-stranded DNA-binding protein 3

1

0

Small-scale

0.426

High

1328310

CCDC8
Coiled-coil domain-containing protein 8

1

0

Small-scale

0.426

High

1328817

MYLK2
Myosin light chain kinase 2, skeletal/cardiac muscle

1

0

Small-scale

0.426

High

1334608

LN28A
Protein lin-28 homolog A

1

0

High-throughput

0.426

High

831814

CEBPA
CCAAT/enhancer-binding protein alpha

1

1

High-throughput

0.408

High

1173341

NEK10
Serine/threonine-protein kinase Nek10

1

1

High-throughput

0.407

High

1355787

PS1C2
Psoriasis susceptibility 1 candidate gene 2 protein

2

0

High-throughput

0.316

High

793775

GLP1R
Glucagon-like peptide 1 receptor

1

0

Small-scale

0.288

High

363353

FINC
Fibronectin

1

0

High-throughput

0.279

Low

385738

NTRK1
High affinity nerve growth factor receptor

1

0

High-throughput

0.249

Low

1053693

GRM2
Metabotropic glutamate receptor 2

1

0

High-throughput

0.249

Low

1252246

TIP
T-cell immunomodulatory protein

1

0

High-throughput

0.249

Low

1343081

LUC7L
Putative RNA-binding protein Luc7-like 1

1

0

Small-scale

0.232

Low


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Last updated: 15 Jul 2024