HitPredict

Interactor 1: U1135 (Q8VY74)
U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12 snRNP 35 kDa protein) (U11/U12-35K)
Gene: SNRNP35

Interactor 2: SR30 (Q9XFR5)
Serine/arginine-rich splicing factor SR30 (At-SR30) (At-SRp30) (AtSR30) (SF2/ASF-like splicing modulator Srp30) (Serine-arginine rich RNA binding protein 30)
Gene: SR30

Species: Arabidopsis thaliana

Source: biogrid

Category: Small-scale

Confidence: High

Method score	Annotation score	Interaction score
0.41	1.00	0.647

Property	Details
Experiments	15987817
Identification Methods	pull down
Interaction Type	direct interaction

Property	Details
Interacting Pfam domains	RRM_1~RRM_1
Common GO terms	GO:0003723 - RNA binding GO:0005634 - nucleus GO:0005681 - spliceosomal complex GO:0006397 - mRNA processing GO:0008380 - RNA splicing and 1 others more... GO:0016607 - nuclear speck
Homologous interactions	20

Homologous interactions (Top 20)

Color coding for hit scores

	1 333 At			1 268
+	At
		1192569 RU17_ARATH (48-333): 2.7e-46: 164: 26.89		SR30_ARATH (1-268): 6.43e-65: 205: 100.00
+	At
		198815 U1135_ARATH (1-333): 1.16e-48: 167: 100.00		SR34_ARATH (1-242): 3.49e-56: 184: 60.71
+	At
		1246195 CYP59_ARATH (58-325): 2.3e-36: 138: 20.15		SR30_ARATH (1-268): 6.43e-65: 205: 100.00
+	At
		198810 CYP59_ARATH (58-325): 2.3e-36: 138: 20.15		SR34_ARATH (1-242): 3.49e-56: 184: 60.71
+	At
		1246194 CYP59_ARATH (58-325): 2.3e-36: 138: 20.15		Q9SPI1_ARATH (1-242): 1.55e-55: 182: 59.77
+	Hs
		550259 PABP1_HUMAN (55-262): 5.2e-35: 136: 15.87		SRSF9_HUMAN (2-222): 3.33e-50: 166: 45.70
+	Mm
		915298 TIA1_MOUSE (59-277): 1.38e-40: 147: 14.93		Q542V3_MOUSE (8-260): 3.78e-40: 146: 34.67
+	Mm
		710979 TIA1_MOUSE (59-277): 1.38e-40: 147: 14.93		PABP1_MOUSE (8-196): 1.15e-35: 135: 18.56
+	Hs
		550097 PABP1_HUMAN (55-262): 5.2e-35: 136: 15.87		PABP1_HUMAN (8-196): 9.46e-36: 136: 18.56
+	Hs
		550311 PAP1L_HUMAN (55-259): 4.9e-35: 136: 16.59		PABP1_HUMAN (8-196): 9.46e-36: 136: 18.56
+	Hs
		1197178 PAP1L_HUMAN (55-259): 4.9e-35: 136: 16.59		PABP3_HUMAN (3-196): 8.41e-33: 127: 18.09
+	At
		1354348 U1135_ARATH (1-333): 1.16e-48: 167: 100.00		RSZ33_ARATH (3-101): 3.47e-21: 92.2: 43.43
+	Ce
		1068105 Q09584_CAEEL (20-200): 1.82e-40: 146: 29.12		RSP6_CAEEL (6-80): 7.05e-22: 91.4: 42.67
+	At
		1246189 CYP59_ARATH (58-325): 2.3e-36: 138: 20.15		RSZ33_ARATH (3-101): 3.47e-21: 92.2: 43.43
+	Hs
		550232 PABP1_HUMAN (55-262): 5.2e-35: 136: 15.87		SRSF3_HUMAN (6-102): 1.03e-22: 93.3: 37.62
+	Hs
		550250 PABP1_HUMAN (55-262): 5.2e-35: 136: 15.87		ELAV2_HUMAN (78-263): 2.09e-15: 76.6: 12.63
+	Hs
		550237 PABP1_HUMAN (55-262): 5.2e-35: 136: 15.87		TIAR_HUMAN (2-115): 4.62e-15: 75.8: 20.69
+	Hs
		550137 PABP1_HUMAN (55-262): 5.2e-35: 136: 15.87		TIA1_HUMAN (2-120): 2.03e-14: 74.3: 16.81
+	Mm
		915314 TIA1_MOUSE (59-277): 1.38e-40: 147: 14.93		SRSF1_MOUSE (95-225): 3.51e-10: 60.9: 17.42
+	Hs
		550244 PABP1_HUMAN (55-262): 5.2e-35: 136: 15.87		SRSF1_HUMAN (95-225): 3.51e-10: 60.9: 17.42