HitPredict

Interactor 1: RPOD (P00579)
RNA polymerase sigma factor RpoD (Sigma-70)
Gene: RPOD

Interactor 2: RHAR (P09378)
HTH-type transcriptional activator RhaR (L-rhamnose operon transcriptional activator RhaR)
Gene: RHAR

Species: Escherichia coli K-12

Source: intact

Category: Small-scale

Confidence: High

Method score	Annotation score	Interaction score
0.62	0.50	0.561

Property	Details
Experiments	24561554, 15342598
Identification Methods	two hybrid, biochemical, two hybrid array
Interaction Type	direct interaction, physical association

Property	Details
Interacting Pfam domains	-
Common GO terms	-
Homologous interactions	8

Homologous interactions

Color coding for hit scores

	1 613 Ec			1 282
+	Ec
		340844 RPOD_ECOLI (1-613): 0: 642: 100.00		RHAS_ECOLI (11-276): 1.32e-79: 243: 34.46
+	Ec
		340896 RPOD_ECOLI (1-613): 0: 642: 100.00		YPDC_ECOLI (6-277): 1.79e-65: 208: 22.83
+	Ec
		340867 RPOD_ECOLI (1-613): 0: 642: 100.00		MELR_ECOLI (15-281): 6.93e-62: 199: 18.09
+	Ec
		340863 RPOD_ECOLI (1-613): 0: 642: 100.00		ARAC_ECOLI (39-281): 2.16e-51: 171: 23.41
+	Ec
		340878 RPOD_ECOLI (1-613): 0: 642: 100.00		CHBR_ECOLI (31-280): 4.48e-48: 163: 17.83
+	Ec
		340882 RPOD_ECOLI (1-613): 0: 642: 100.00		GADX_ECOLI (36-281): 5.4e-45: 155: 16.34
+	Ec
		340843 RPOD_ECOLI (1-613): 0: 642: 100.00		ADA_ECOLI (135-276): 2.23e-27: 110: 22.07
+	Ss
		938249 SIGA_SYNY3 (187-611): 5.17e-86: 276: 37.41		P73364_SYNY3 (145-277): 3.71e-35: 128: 18.05