Protein: RRP9
Ribosomal RNA-processing protein 9

Gene: RRP9
Organism: Saccharomyces cerevisiae S288C
Interactions: 113
UniProt ID: Q06506

Gene Ontology (top 5):
GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005654 - nucleoplasm
GO:0005730 - nucleolus

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

635651

PWP2
Periodic tryptophan protein 2

6

18

High-throughput

0.945

High

987606

UTP4
U3 small nucleolar RNA-associated protein 4

4

18

Small-scale

0.895

High

973678

UTP17
NET1-associated nuclear protein 1

3

17

High-throughput

0.861

High

979245

UTP15
U3 small nucleolar RNA-associated protein 15

3

19

High-throughput

0.861

High

985421

UTP13
U3 small nucleolar RNA-associated protein 13

3

17

High-throughput

0.861

High

707144

DCA13
Protein SOF1

2

20

High-throughput

0.754

High

985815

UTP21
U3 small nucleolar RNA-associated protein 21

2

19

Small-scale

0.754

High

987624

NOP58
Nucleolar protein 58

7

12

Small-scale

0.741

High

767426

UTP7
U3 small nucleolar RNA-associated protein 7

2

18

High-throughput

0.737

High

792591

UTP10
U3 small nucleolar RNA-associated protein 10

6

4

Small-scale

0.731

High

979032

DHR1
Probable ATP-dependent RNA helicase DHR1

6

20

Small-scale

0.730

High

634782

KRR1
KRR1 small subunit processome component

5

1

High-throughput

0.716

High

811564

MPP10
U3 small nucleolar RNA-associated protein MPP10

5

6

Small-scale

0.716

High

982881

RRP5
rRNA biogenesis protein RRP5

5

18

Small-scale

0.715

High

987604

NOC4
Nucleolar complex protein 4

5

6

Small-scale

0.714

High

715987

UTP20
U3 small nucleolar RNA-associated protein 20

6

0

Small-scale

0.703

High

860748

UTP22
U3 small nucleolar RNA-associated protein 22

4

2

High-throughput

0.701

High

986072

SGD1
Suppressor of glycerol defect protein 1

4

10

Small-scale

0.701

High

865621

UBP10
Ubiquitin carboxyl-terminal hydrolase 10

1

20

High-throughput

0.698

High

748713

ENP1
Essential nuclear protein 1

5

3

Small-scale

0.695

High

866061

NAT10
RNA cytidine acetyltransferase

4

3

High-throughput

0.694

High

987615

BMS1
Ribosome biogenesis protein BMS1

4

8

High-throughput

0.694

High

987614

UTP16
U3 small nucleolar RNA-associated protein 16

5

0

High-throughput

0.686

High

866621

IMP4
U3 small nucleolar ribonucleoprotein protein IMP4

3

2

High-throughput

0.667

High

970473

UTP6
U3 small nucleolar RNA-associated protein 6

3

3

High-throughput

0.667

High

987622

NOP56
Nucleolar protein 56

3

12

High-throughput

0.667

High

987609

RCL1
RNA 3'-terminal phosphate cyclase-like protein

3

2

High-throughput

0.656

High

987627

NOP14
Nucleolar complex protein 14

3

2

High-throughput

0.656

High

549506

FBRL
rRNA 2'-O-methyltransferase fibrillarin

3

8

Small-scale

0.642

High

987623

RRP36
rRNA biogenesis protein RRP36

3

0

Small-scale

0.639

High

756793

UTP9
U3 small nucleolar RNA-associated protein 9

3

0

High-throughput

0.638

High

408138

RS13
Small ribosomal subunit protein uS15

2

5

High-throughput

0.628

High

644949

RS5
Small ribosomal subunit protein uS7

2

7

High-throughput

0.628

High

965043

UBP3
Ubiquitin carboxyl-terminal hydrolase 3

1

15

High-throughput

0.618

High

772682

UTP18
U3 small nucleolar RNA-associated protein 18

1

3

High-throughput

0.618

High

810924

MTR4
ATP-dependent RNA helicase DOB1

1

20

High-throughput

0.618

High

987603

RRP9
Ribosomal RNA-processing protein 9

1

18

High-throughput

0.618

High

987620

UTP12
U3 small nucleolar RNA-associated protein 12

1

18

High-throughput

0.618

High

784527

DIM1
Dimethyladenosine transferase

2

2

High-throughput

0.611

High

589099

PRP4
U4/U6 small nuclear ribonucleoprotein PRP4

1

19

High-throughput

0.595

High

774754

UTP25
U3 small nucleolar RNA-associated protein 25

2

0

Small-scale

0.585

High

775393

FAF1
Protein FAF1

2

0

Small-scale

0.585

High

479825

RS4A
Small ribosomal subunit protein eS4A

2

5

High-throughput

0.584

High

865423

CSL4
Exosome complex component CSL4

2

3

High-throughput

0.584

High

979721

UTP14
U3 small nucleolar RNA-associated protein 14

2

11

High-throughput

0.584

High

987618

RRP6
Exosome complex exonuclease RRP6

2

6

High-throughput

0.584

High

630545

RRP7
Ribosomal RNA-processing protein 7

2

0

High-throughput

0.559

High

730734

DHR2
Probable ATP-dependent RNA helicase DHR2

1

13

High-throughput

0.541

High

628503

SIS1
Protein SIS1

2

15

High-throughput

0.521

High

512844

SSB1
Ribosome-associated molecular chaperone SSB1

2

15

High-throughput

0.504

High

686925

PROB
Glutamate 5-kinase

1

2

High-throughput

0.489

High

688443

RPC3
DNA-directed RNA polymerase III subunit RPC3

1

1

High-throughput

0.479

High

700101

IMP3
U3 small nucleolar ribonucleoprotein protein IMP3

1

6

High-throughput

0.479

High

733606

RL1D1
Ribosome biogenesis protein UTP30

1

6

High-throughput

0.479

High

755000

RRP4
Exosome complex component RRP4

1

5

High-throughput

0.479

High

758474

RRP8
25S rRNA

1

1

High-throughput

0.479

High

768121

LCP5
U3 small nucleolar ribonucleoprotein protein LCP5

1

2

High-throughput

0.479

High

799862

ROK1
ATP-dependent RNA helicase ROK1

1

17

High-throughput

0.479

High

809591

RRP41
Exosome complex component SKI6

1

10

High-throughput

0.479

High

811357

NOP9
Nucleolar protein 9

1

2

Small-scale

0.479

High

816911

NOL10
Ribosome biogenesis protein ENP2

1

4

High-throughput

0.479

High

860813

RRP46
Exosome complex component RRP46

1

8

High-throughput

0.479

High

864737

ESF2
Pre-rRNA-processing protein ESF2

1

1

High-throughput

0.479

High

866270

NOP15
Ribosome biogenesis protein 15

1

20

High-throughput

0.479

High

872810

ORC1
Origin recognition complex subunit 1

1

9

High-throughput

0.479

High

975840

TOM1
E3 ubiquitin-protein ligase TOM1

1

11

High-throughput

0.479

High

976866

HAS1
ATP-dependent RNA helicase HAS1

1

20

High-throughput

0.479

High

978635

UTP5
U3 small nucleolar RNA-associated protein 5

1

18

High-throughput

0.479

High

983772

FCF1
rRNA-processing protein FCF1

1

1

High-throughput

0.479

High

984311

RRP45
Exosome complex component RRP45

1

8

High-throughput

0.479

High

986753

NEP1
Ribosomal RNA small subunit methyltransferase NEP1

1

3

High-throughput

0.479

High

987605

BFR2
Protein BFR2

1

4

High-throughput

0.479

High

987610

RRP44
Exosome complex exonuclease DIS3

1

8

High-throughput

0.479

High

987612

RRP40
Exosome complex component RRP40

1

1

High-throughput

0.479

High

987616

FCF2
rRNA-processing protein FCF2

1

1

High-throughput

0.479

High

987617

SAS10
Something about silencing protein 10

1

1

High-throughput

0.479

High

987619

MAK21
Ribosome biogenesis protein MAK21

1

6

High-throughput

0.479

High

987621

RRP42
Exosome complex component RRP42

1

8

High-throughput

0.479

High

987625

RRP12
Ribosomal RNA-processing protein 12

1

3

High-throughput

0.479

High

630266

RRP43
Exosome complex component RRP43

1

0

High-throughput

0.458

High

711077

UTP11
U3 small nucleolar RNA-associated protein 11

1

0

High-throughput

0.458

High

755204

LRP1
Exosome complex protein LRP1

1

0

High-throughput

0.458

High

774284

RRT14
Regulator of rDNA transcription protein 14

1

0

High-throughput

0.458

High

816977

MTR3
Exosome complex component MTR3

1

0

High-throughput

0.458

High

861033

UTP8
U3 small nucleolar RNA-associated protein 8

1

0

High-throughput

0.458

High

987093

ESF1
Pre-rRNA-processing protein ESF1

1

0

High-throughput

0.458

High

987608

CMS1
Protein CMS1

1

0

High-throughput

0.458

High

987628

PNO1
Pre-rRNA-processing protein PNO1

1

0

High-throughput

0.458

High

477457

UBI4P
Polyubiquitin [Cleaved into: Ubiquitin]

1

16

High-throughput

0.457

High

334991

G3P1
Glyceraldehyde-3-phosphate dehydrogenase 1

1

6

High-throughput

0.457

High

389332

HXKA
Hexokinase-1

1

2

High-throughput

0.457

High

554750

HSP26
Heat shock protein 26

1

3

High-throughput

0.457

High

471269

RS22A
Small ribosomal subunit protein uS8A

1

3

High-throughput

0.437

High

663401

TF2B
Transcription initiation factor IIB

1

3

High-throughput

0.437

High

665068

BMH1
Protein BMH1

1

10

High-throughput

0.437

High

701103

SMY2
Protein SMY2

1

1

High-throughput

0.437

High

762582

LAA1
AP-1 accessory protein LAA1

1

2

High-throughput

0.437

High

987626

RS22B
Small ribosomal subunit protein uS8B

1

3

High-throughput

0.437

High

492533

HSP71
Heat shock protein SSA1

1

14

High-throughput

0.407

High

495041

HSP72
Heat shock protein SSA2

1

15

High-throughput

0.407

High

499088

RL4A
Large ribosomal subunit protein uL4A

1

7

High-throughput

0.407

High

769555

SSB2
Ribosome-associated molecular chaperone SSB2

1

15

High-throughput

0.407

High

785229

MPG1
Mannose-1-phosphate guanyltransferase

1

5

High-throughput

0.407

High

859298

RRT6
Regulator of rDNA transcription protein 6

1

0

High-throughput

0.279

Low

987611

AVO1
Target of rapamycin complex 2 subunit AVO1

1

0

High-throughput

0.279

Low

756911

AIM46
Altered inheritance of mitochondria protein 46, mitochondrial

1

0

High-throughput

0.261

Low

754039

PIH1
Protein interacting with Hsp90 1

1

0

Small-scale

0.251

Low

524456

CAF20
Cap-associated protein CAF20

1

0

High-throughput

0.249

Low

755501

SBE22
Protein SBE22

1

0

High-throughput

0.249

Low

987607

VAM6
Vacuolar morphogenesis protein 6

1

0

High-throughput

0.249

Low

987613

SGO1
Shugoshin

1

0

High-throughput

0.249

Low

984145

NSE3
Non-structural maintenance of chromosome element 3

1

0

High-throughput

0.232

Low


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Last updated: 15 Jul 2024