HitPredict

Interactor 1: SMD1 (P62314)
Small nuclear ribonucleoprotein Sm D1 (Sm-D1) (Sm-D autoantigen) (snRNP core protein D1)
Gene: SNRPD1

Interactor 2: RBM39 (Q14498)
RNA-binding protein 39 (CAPER alpha) (CAPERalpha) (Hepatocellular carcinoma protein 1) (RNA-binding motif protein 39) (RNA-binding region-containing protein 2) (Splicing factor HCC1)
Gene: RBM39

Species: Homo sapiens

Source: intact

Category: Small-scale

Confidence: High

Method score	Annotation score	Interaction score
0.71	0.60	0.656

Property	Details
Experiments	28302793, 35271311, 16051665
Identification Methods	affinity chromatography technology, anti tag coimmunoprecipitation
Interaction Type	physical association, association

Property	Details
Interacting Pfam domains	-
Common GO terms	GO:0003723 - RNA binding GO:0005654 - nucleoplasm GO:0008380 - RNA splicing GO:1990446 - U1 snRNP binding
Homologous interactions	10

Homologous interactions

Color coding for hit scores

	1 119 Hs			1 530
+	Hs
		1127284 LSM4_HUMAN (1-89): 1.25e-33: 115: 23.33		RBM39_HUMAN (1-530): 3.07e-101: 316: 100.00
+	Hs
		1127270 LSM2_HUMAN (1-88): 7.65e-33: 111: 31.11		RBM39_HUMAN (1-530): 3.07e-101: 316: 100.00
+	Hs
		974738 SMD3_HUMAN (2-102): 1.07e-31: 110: 28.71		RBM39_HUMAN (1-530): 3.07e-101: 316: 100.00
+	Hs
		973914 RUXF_HUMAN (3-69): 8.63e-27: 96.6: 28.36		RBM39_HUMAN (1-530): 3.07e-101: 316: 100.00
+	Hs
		974075 RUXF_HUMAN (3-69): 8.63e-27: 96.6: 28.36		PUF60_HUMAN (141-513): 7.15e-66: 225: 19.41
+	Sc
		403483 LSM2_YEAST (1-87): 1.39e-28: 101: 28.09		PABP_YEAST (40-429): 2.84e-51: 186: 14.11
+	Sc
		403528 LSM4_YEAST (1-76): 3.82e-15: 69.3: 27.59		PABP_YEAST (40-429): 2.84e-51: 186: 14.11
+	Hs
		973922 RUXF_HUMAN (3-69): 8.63e-27: 96.6: 28.36		SF3B4_HUMAN (238-395): 5.68e-23: 103: 22.79
+	Dm
		232196 SMD3_DROME (2-102): 6.28e-32: 111: 24.75		Q9W424_DROME (148-329): 2.26e-15: 79.3: 28.80
+	Hs
		172058 RUXF_HUMAN (3-69): 8.63e-27: 96.6: 28.36		HNRDL_HUMAN (144-309): 3.63e-15: 79.7: 31.93