HitPredict

Interactor 1: RUXF (Q9SUM2)
Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF)
Gene: At4g30220

Interactor 2: RUXF (Q9SUM2)
Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF)
Gene: At4g30220

Species: Arabidopsis thaliana

Source: intact

Category: High-throughput

Confidence: High

Method score	Annotation score	Interaction score
0.48	1.00	0.698

Property	Details
Experiments	21798944
Identification Methods	two hybrid, two hybrid array
Interaction Type	direct interaction, physical association

Property	Details
Interacting Pfam domains	LSM~LSM
Common GO terms	GO:0000398 - mRNA splicing, via spliceosome GO:0003723 - RNA binding GO:0005681 - spliceosomal complex GO:0120114 - Sm-like protein family complex
Homologous interactions	17

Homologous interactions

Color coding for hit scores

	1 88 At			1 88
+	Zm
		38968 A0A1D6MPT6_MAIZE (6-86): 3.4e-39: 129: 28.05		A0A1D6MPT6_MAIZE (6-86): 3.4e-39: 129: 28.05
+	Hs
		974094 LSM4_HUMAN (6-86): 2.88e-37: 123: 26.83		RUXF_HUMAN (3-76): 6.96e-35: 115: 78.38
+	Hs
		974350 LSM4_HUMAN (6-86): 2.88e-37: 123: 26.83		LSM6_HUMAN (1-80): 4.92e-34: 113: 42.50
+	Hs
		973871 RUXF_HUMAN (3-76): 6.96e-35: 115: 78.38		LSM6_HUMAN (1-80): 4.92e-34: 113: 42.50
+	Dm
		1480000 Q9VKW8_DROME (6-86): 4.04e-38: 126: 32.14		Q9W2P5_DROME (10-80): 1.95e-29: 101: 45.07
+	Sp
		153961 LSM4_SCHPO (6-87): 1.46e-32: 110: 33.74		LSM4_SCHPO (6-87): 1.46e-32: 110: 33.74
+	Dm
		1479978 Q9VKW8_DROME (6-86): 4.04e-38: 126: 32.14		Q9VTW6_DROME (10-83): 3.74e-24: 88.9: 28.57
+	Hs
		1491049 LSM4_HUMAN (6-86): 2.88e-37: 123: 26.83		LSM2_HUMAN (10-83): 2.27e-23: 86.9: 28.57
+	Hs
		974878 LSM4_HUMAN (6-86): 2.88e-37: 123: 26.83		SMD3_HUMAN (8-77): 2.31e-22: 85: 21.43
+	Sc
		933126 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		RUXF_YEAST (2-78): 1.15e-29: 102: 56.41
+	Hs
		974087 RUXF_HUMAN (3-76): 6.96e-35: 115: 78.38		LSM2_HUMAN (10-83): 2.27e-23: 86.9: 28.57
+	Hs
		973874 RUXF_HUMAN (3-76): 6.96e-35: 115: 78.38		SMD3_HUMAN (8-77): 2.31e-22: 85: 21.43
+	Hs
		974347 LSM6_HUMAN (1-80): 4.92e-34: 113: 42.50		LSM2_HUMAN (10-83): 2.27e-23: 86.9: 28.57
+	Dm
		232172 RUXF_DROME (2-84): 9.91e-35: 115: 69.88		SMD3_DROME (8-77): 2.91e-20: 80.4: 21.43
+	Sc
		847813 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		SMD3_YEAST (8-77): 2.99e-25: 91.9: 22.86
+	Sc
		818038 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		LSM4_YEAST (6-86): 6.07e-22: 85.8: 25.00
+	Sc
		795908 RUXF_YEAST (2-78): 1.15e-29: 102: 56.41		LSM2_YEAST (10-73): 4.04e-09: 50.4: 38.81