Protein: Q9LXU1
Cell differentiation, Rcd1-like protein (Phytochrome interacting molecule 1)

Gene: Q9LXU1, NOT9B
Organism: Arabidopsis thaliana
Interactions: 238
UniProt ID: Q9LXU1

Gene Ontology (top 5):
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0006402 - mRNA catabolic process
GO:0030014 - CCR4-NOT complex

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1443724

WRK47
Probable WRKY transcription factor 47

1

4

High-throughput

0.586

High

308018

TCP10
Transcription factor TCP10

1

15

High-throughput

0.573

High

749531

IAA4
Auxin-responsive protein IAA4

1

14

High-throughput

0.573

High

963641

DRE2G
Dehydration-responsive element-binding protein 2G

1

6

High-throughput

0.573

High

1020106

ATHB4
Homeobox-leucine zipper protein ATHB-4

1

12

High-throughput

0.573

High

1184763

TGA3
Transcription factor TGA3

1

1

High-throughput

0.573

High

1299988

BH063
Transcription factor bHLH63

1

13

High-throughput

0.573

High

1318205

PIL1
Transcription factor PIL1

1

11

High-throughput

0.573

High

1319310

IAA26
Auxin-responsive protein IAA26

1

14

High-throughput

0.573

High

1342544

ARFS
Auxin response factor 19

1

3

High-throughput

0.573

High

1426471

BZP43
Basic leucine zipper 43

1

10

High-throughput

0.573

High

1426675

TCP7
Transcription factor TCP7

1

9

High-throughput

0.573

High

1427440

ARR11
Two-component response regulator ARR11

1

5

High-throughput

0.573

High

1441408

ZHD9
Zinc-finger homeodomain protein 9

1

4

High-throughput

0.573

High

1441717

NAC59
NAC domain-containing protein 59

1

4

High-throughput

0.573

High

1442587

TCP23
Transcription factor TCP23

1

9

High-throughput

0.573

High

1442986

BH121
Transcription factor bHLH121

1

7

High-throughput

0.573

High

1443692

TCP13
Transcription factor TCP13

1

5

High-throughput

0.573

High

1443697

SRS4
Protein SHI RELATED SEQUENCE 4

1

3

High-throughput

0.573

High

1443719

C3H29
Zinc finger CCCH domain-containing protein 29

1

3

High-throughput

0.573

High

1443707

TERT
Telomerase reverse transcriptase

2

0

Small-scale

0.561

High

51730

TCP18
Transcription factor TCP18

1

14

High-throughput

0.560

High

86214

BZP63
Basic leucine zipper 63

1

10

High-throughput

0.560

High

102852

MYB87
Transcription factor MYB87

1

7

High-throughput

0.560

High

198490

O22179
At2g23280

1

9

High-throughput

0.560

High

198661

HSFB3
Heat stress transcription factor B-3

1

2

High-throughput

0.560

High

198722

MYB12
Transcription factor MYB12

1

6

High-throughput

0.560

High

199298

COL14
Zinc finger protein CONSTANS-LIKE 14

1

9

High-throughput

0.560

High

199636

BH014
Transcription factor bHLH14

1

10

High-throughput

0.560

High

200395

COL11
Putative zinc finger protein CONSTANS-LIKE 11

1

10

High-throughput

0.560

High

264918

TCP9
Transcription factor TCP9

1

9

High-throughput

0.560

High

305865

EF101
Ethylene-responsive transcription factor 2

1

4

High-throughput

0.560

High

306042

TGT3B
Trihelix transcription factor GT-3b

1

8

High-throughput

0.560

High

846968

TGA2
Transcription factor TGA2

1

1

High-throughput

0.560

High

857810

HAT1
Homeobox-leucine zipper protein HAT1

1

11

High-throughput

0.560

High

857849

HAT3
Homeobox-leucine zipper protein HAT3

1

11

High-throughput

0.560

High

861475

ATHB7
Homeobox-leucine zipper protein ATHB-7

1

11

High-throughput

0.560

High

885983

IAA1
Auxin-responsive protein IAA1

1

14

High-throughput

0.560

High

886027

IAA2
Auxin-responsive protein IAA2

1

14

High-throughput

0.560

High

1020687

C3H30
Zinc finger CCCH domain-containing protein 30

1

3

High-throughput

0.560

High

1051118

HAT4
Homeobox-leucine zipper protein HAT4

1

11

High-throughput

0.560

High

1070202

BBX20
B-box zinc finger protein 20

1

8

High-throughput

0.560

High

1081249

FIT
Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR

1

8

High-throughput

0.560

High

1082041

PCFS4
Polyadenylation and cleavage factor homolog 4

1

2

High-throughput

0.560

High

1169300

BH019
Transcription factor bHLH19

1

9

High-throughput

0.560

High

1181803

IAA3
Auxin-responsive protein IAA3

1

14

High-throughput

0.560

High

1181835

IAA6
Auxin-responsive protein IAA6

1

14

High-throughput

0.560

High

1181970

IAA10
Auxin-responsive protein IAA10

1

14

High-throughput

0.560

High

1182075

IAA13
Auxin-responsive protein IAA13

1

14

High-throughput

0.560

High

1184249

CONS
Zinc finger protein CONSTANS

1

7

High-throughput

0.560

High

1184626

MYC2
Transcription factor MYC2

1

8

High-throughput

0.560

High

1185385

ERF88
Ethylene-responsive transcription factor ERF088

1

7

High-throughput

0.560

High

1185574

BH060
Transcription factor bHLH60

1

13

High-throughput

0.560

High

1220986

BH109
Transcription factor bHLH109

1

12

High-throughput

0.560

High

1226118

BH130
Transcription factor bHLH130

1

15

High-throughput

0.560

High

1231360

Y4845
BTB/POZ domain-containing protein At4g08455

1

1

High-throughput

0.560

High

1235362

ERF86
Ethylene-responsive transcription factor ERF086

1

10

High-throughput

0.560

High

1299265

MYB39
Transcription factor MYB39

1

5

High-throughput

0.560

High

1299801

BH123
Transcription factor bHLH123

1

15

High-throughput

0.560

High

1300235

HSFA3
Heat stress transcription factor A-3

1

2

High-throughput

0.560

High

1300478

BH128
Transcription factor bHLH128

1

15

High-throughput

0.560

High

1300649

IAA31
Auxin-responsive protein IAA31

1

14

High-throughput

0.560

High

1300665

GTL2
Trihelix transcription factor GTL2

1

4

High-throughput

0.560

High

1300895

GAT28
GATA transcription factor 28

1

8

High-throughput

0.560

High

1318740

GRF2
Growth-regulating factor 2

1

1

High-throughput

0.560

High

1319359

ATB20
Homeobox-leucine zipper protein ATHB-20

1

11

High-throughput

0.560

High

1319634

ATB13
Homeobox-leucine zipper protein ATHB-13

1

12

High-throughput

0.560

High

1319892

ERF92
Ethylene-responsive transcription factor 1B

1

5

High-throughput

0.560

High

1320517

TCP4
Transcription factor TCP4

1

5

High-throughput

0.560

High

1341729

Q8RU59
BZIP protein

1

10

High-throughput

0.560

High

1342808

BH087
Transcription factor bHLH87

1

16

High-throughput

0.560

High

1354427

STKLH
GLABROUS1 enhancer-binding protein-like 1

1

2

High-throughput

0.560

High

1354727

BH103
Transcription factor bHLH103

1

18

High-throughput

0.560

High

1354939

ENAP1
Trihelix transcription factor ENAP1

1

3

High-throughput

0.560

High

1372908

NAC72
NAC domain-containing protein 72

1

4

High-throughput

0.560

High

1372942

BH137
Transcription factor bHLH137

1

13

High-throughput

0.560

High

1373368

TCP14
Transcription factor TCP14

1

15

High-throughput

0.560

High

1375792

ERF03
Ethylene-responsive transcription factor ERF003

1

4

High-throughput

0.560

High

1376566

BH112
Transcription factor bHLH112

1

12

High-throughput

0.560

High

1376589

ARFB
Auxin response factor 2

1

7

High-throughput

0.560

High

1421484

TCP8
Transcription factor TCP8

1

9

High-throughput

0.560

High

1421503

WRKY6
WRKY transcription factor 6

1

4

High-throughput

0.560

High

1421864

BH122
Transcription factor bHLH122

1

16

High-throughput

0.560

High

1422991

MYB62
Transcription factor MYB62

1

8

High-throughput

0.560

High

1423109

TCP15
Transcription factor TCP15

1

15

High-throughput

0.560

High

1424469

MYB44
Transcription factor MYB44

1

9

High-throughput

0.560

High

1424723

GLK2
Transcription activator GLK2

1

6

High-throughput

0.560

High

1425234

ALC
Transcription factor ALC

1

12

High-throughput

0.560

High

1425690

ZHD10
Zinc-finger homeodomain protein 10

1

4

High-throughput

0.560

High

1426534

TCP5
Transcription factor TCP5

1

5

High-throughput

0.560

High

1426600

AI5L8
ABSCISIC ACID-INSENSITIVE 5-like protein 8

1

9

High-throughput

0.560

High

1426609

NAC90
NAC domain-containing protein 90

1

8

High-throughput

0.560

High

1427069

MYB65
Transcription factor MYB65

1

8

High-throughput

0.560

High

1427175

TCP21
Transcription factor TCP21

1

9

High-throughput

0.560

High

1427396

TGT1
Trihelix transcription factor GT-1

1

5

High-throughput

0.560

High

1427461

SRS7
Protein SHI RELATED SEQUENCE 7

1

3

High-throughput

0.560

High

1427557

TCP1
Transcription factor TCP1

1

5

High-throughput

0.560

High

1441149

BIM1
Transcription factor BIM1

1

12

High-throughput

0.560

High

1441661

ASIL2
Trihelix transcription factor ASIL2

1

8

High-throughput

0.560

High

1441721

MIF2
Mini zinc finger protein 2

1

4

High-throughput

0.560

High

1441803

BH077
Transcription factor bHLH77

1

14

High-throughput

0.560

High

1441890

APRR1
Two-component response regulator-like APRR1

1

2

High-throughput

0.560

High

1442187

BH013
Transcription factor bHLH13

1

13

High-throughput

0.560

High

1442702

BBX21
B-box zinc finger protein 21

1

8

High-throughput

0.560

High

1442997

TCP19
Transcription factor TCP19

1

15

High-throughput

0.560

High

1443221

RAP22
Ethylene-responsive transcription factor RAP2-2

1

10

High-throughput

0.560

High

1443297

BH079
Transcription factor bHLH79

1

12

High-throughput

0.560

High

1443380

TOE2
AP2-like ethylene-responsive transcription factor TOE2

1

3

High-throughput

0.560

High

1443618

HEC3
Transcription factor HEC3

1

14

High-throughput

0.560

High

1443679

MYB46
Transcription factor MYB46

1

7

High-throughput

0.560

High

1443681

MYB11
Transcription factor MYB11

1

6

High-throughput

0.560

High

1443682

BH081
Transcription factor bHLH81

1

11

High-throughput

0.560

High

1443683

TCP16
Transcription factor TCP16

1

9

High-throughput

0.560

High

1443685

AGL18
Agamous-like MADS-box protein AGL18

1

2

High-throughput

0.560

High

1443687

AI5L7
ABSCISIC ACID-INSENSITIVE 5-like protein 7

1

9

High-throughput

0.560

High

1443688

AI5L5
ABSCISIC ACID-INSENSITIVE 5-like protein 5

1

10

High-throughput

0.560

High

1443689

AI5L4
ABSCISIC ACID-INSENSITIVE 5-like protein 4

1

10

High-throughput

0.560

High

1443690

VIP1
Transcription factor VIP1

1

5

High-throughput

0.560

High

1443694

MYB93
Transcription factor MYB93

1

4

High-throughput

0.560

High

1443695

TGT3A
Trihelix transcription factor GT-3a

1

8

High-throughput

0.560

High

1443698

GLK1
Transcription activator GLK1

1

6

High-throughput

0.560

High

1443702

COL3
Zinc finger protein CONSTANS-LIKE 3

1

10

High-throughput

0.560

High

1443703

NAC42
Transcription factor JUNGBRUNNEN 1

1

5

High-throughput

0.560

High

1443709

RA212
Ethylene-responsive transcription factor RAP2-12

1

9

High-throughput

0.560

High

1443710

CRF4
Ethylene-responsive transcription factor CRF4

1

6

High-throughput

0.560

High

1443711

HFA7A
Heat stress transcription factor A-7a

1

2

High-throughput

0.560

High

1443713

DRE2F
Dehydration-responsive element-binding protein 2F

1

9

High-throughput

0.560

High

1443715

FRS11
Protein FAR1-RELATED SEQUENCE 11

1

1

High-throughput

0.560

High

1443716

AGL21
Agamous-like MADS-box protein AGL21

1

1

High-throughput

0.560

High

1443717

WRK42
WRKY transcription factor 42

1

4

High-throughput

0.560

High

1443720

IAA28
Auxin-responsive protein IAA28

1

13

High-throughput

0.560

High

1443722

LHW
Transcription factor LHW

1

8

High-throughput

0.560

High

1443723

HBI1
Transcription factor HBI1

1

14

High-throughput

0.560

High

1443725

IAA27
Auxin-responsive protein IAA27

1

13

High-throughput

0.560

High

1443726

LRL1
Transcription factor LRL1

1

16

High-throughput

0.560

High

1443727

FRS3
Protein FAR1-RELATED SEQUENCE 3

1

1

High-throughput

0.560

High

307842

RFI2
E3 ubiquitin-protein ligase RFI2

1

0

High-throughput

0.549

High

72348

CPSF
30-kDa cleavage and polyadenylation specificity factor 30

1

3

High-throughput

0.541

High

103250

F4K2U3
AGAMOUS-like 39

1

1

High-throughput

0.541

High

199112

BZP10
Basic leucine zipper 10

1

10

High-throughput

0.541

High

200835

IAA19
Auxin-responsive protein IAA19

1

13

High-throughput

0.541

High

265032

ZHD3
Zinc-finger homeodomain protein 3

1

4

High-throughput

0.541

High

266094

ERF60
Ethylene-responsive transcription factor ERF060

1

6

High-throughput

0.541

High

307280

SCL6
Scarecrow-like protein 6

1

1

High-throughput

0.541

High

843025

GBF2
G-box-binding factor 2

1

8

High-throughput

0.541

High

857836

HAT2
Homeobox-leucine zipper protein HAT2

1

11

High-throughput

0.541

High

857871

HAT22
Homeobox-leucine zipper protein HAT22

1

10

High-throughput

0.541

High

857964

KNAT1
Homeobox protein knotted-1-like 1

1

1

High-throughput

0.541

High

869377

KNAT3
Homeobox protein knotted-1-like 3

1

1

High-throughput

0.541

High

1036201

HAT5
Homeobox-leucine zipper protein HAT5

1

11

High-throughput

0.541

High

1169308

BH018
Transcription factor bHLH18

1

9

High-throughput

0.541

High

1181907

IAA8
Auxin-responsive protein IAA8

1

14

High-throughput

0.541

High

1182225

AGL15
Agamous-like MADS-box protein AGL15

1

2

High-throughput

0.541

High

1202159

LHWL3
Transcription factor bHLH155

1

2

High-throughput

0.541

High

1203949

VAL2
B3 domain-containing transcription repressor VAL2

1

3

High-throughput

0.541

High

1261059

RAP26
Ethylene-responsive transcription factor RAP2-6

1

8

High-throughput

0.541

High

1274790

AGL93
Agamous-like MADS-box protein AGL93

1

2

High-throughput

0.541

High

1274983

LHWL2
Transcription factor bHLH157

1

2

High-throughput

0.541

High

1284705

NAC47
NAC transcription factor 47

1

3

High-throughput

0.541

High

1299693

GAT24
GATA transcription factor 24

1

8

High-throughput

0.541

High

1318712

GRF5
Growth-regulating factor 5

1

1

High-throughput

0.541

High

1318858

ERF99
Ethylene-responsive transcription factor 13

1

6

High-throughput

0.541

High

1320346

MYB86
Transcription factor MYB86

1

4

High-throughput

0.541

High

1341769

COL16
Zinc finger protein CONSTANS-LIKE 16

1

8

High-throughput

0.541

High

1354170

Q8VWG0
AtbZIP transcription factor

1

5

High-throughput

0.541

High

1355050

HHO2
Transcription factor HHO2

1

5

High-throughput

0.541

High

1373122

BH007
Transcription factor bHLH7

1

16

High-throughput

0.541

High

1376020

HDG2
Homeobox-leucine zipper protein HDG2

1

6

High-throughput

0.541

High

1376240

LRP1
Protein LATERAL ROOT PRIMORDIUM 1

1

3

High-throughput

0.541

High

1376615

Q94JR1
UMP kinase

1

5

High-throughput

0.541

High

1421540

NAC81
Protein ATAF2

1

4

High-throughput

0.541

High

1421681

WRK18
WRKY transcription factor 18

1

5

High-throughput

0.541

High

1421982

RHD6
Transcription factor RHD6

1

17

High-throughput

0.541

High

1424950

BH145
Transcription factor bHLH145

1

1

High-throughput

0.541

High

1425700

AGL81
Agamous-like MADS-box protein AGL81

1

3

High-throughput

0.541

High

1426305

TCP6
Transcription factor TCP6

1

9

High-throughput

0.541

High

1426460

BIM3
Transcription factor BIM3

1

11

High-throughput

0.541

High

1426805

Q9FNB9
Basic leucine zipper transcription factor

1

10

High-throughput

0.541

High

1427022

HHO3
Transcription factor HHO3

1

4

High-throughput

0.541

High

1427490

BH143
Transcription factor bHLH143

1

1

High-throughput

0.541

High

1441030

Q9LDL9
Activator of spomin::LUC2

1

8

High-throughput

0.541

High

1442737

GAT25
GATA transcription factor 25

1

8

High-throughput

0.541

High

1442745

MIP1B
B-box domain protein 31

1

8

High-throughput

0.541

High

1442803

HHO1
Transcription factor HHO1

1

6

High-throughput

0.541

High

1443132

TGT4
Trihelix transcription factor GT-4

1

5

High-throughput

0.541

High

1443479

ATB53
Homeobox-leucine zipper protein ATHB-53

1

11

High-throughput

0.541

High

1443609

BH061
Transcription factor bHLH61

1

9

High-throughput

0.541

High

1443686

SCR
Protein SCARECROW

1

1

High-throughput

0.541

High

1443693

BH030
Transcription factor bHLH30

1

12

High-throughput

0.541

High

1443700

ABI5
Protein ABSCISIC ACID-INSENSITIVE 5

1

7

High-throughput

0.541

High

1443701

WRK60
Probable WRKY transcription factor 60

1

5

High-throughput

0.541

High

1443704

BH094
Transcription factor bHLH94

1

8

High-throughput

0.541

High

1443706

Q9SPG1
Myb domain protein 42

1

3

High-throughput

0.541

High

1443712

ZHD7
Zinc-finger homeodomain protein 7

1

4

High-throughput

0.541

High

1443718

ARFI
Auxin response factor 9

1

6

High-throughput

0.541

High

1443721

SHI
Protein SHORT INTERNODES

1

3

High-throughput

0.541

High

101104

IDD15
Zinc finger protein SHOOT GRAVITROPISM 5

1

0

High-throughput

0.536

High

265693

KIWI
RNA polymerase II transcriptional coactivator KIWI

1

0

High-throughput

0.536

High

1284215

TIF8
Protein TIFY 8

1

0

High-throughput

0.536

High

1318831

BPC6
Protein BASIC PENTACYSTEINE6

1

0

High-throughput

0.536

High

1421965

AGL86
Agamous-like MADS-box protein AGL86

1

0

High-throughput

0.536

High

1425217

BAM8
Beta-amylase 8

1

0

High-throughput

0.536

High

1443714

NFXL1
NF-X1-type zinc finger protein NFXL1

1

0

High-throughput

0.536

High

86262

ARIA
ARM REPEAT PROTEIN INTERACTING WITH ABF2

1

0

High-throughput

0.518

High

307490

WOX13
WUSCHEL-related homeobox 13

1

0

High-throughput

0.518

High

1376648

SPL6
Squamosa promoter-binding-like protein 6

1

0

High-throughput

0.518

High

1443708

Q9SQY8
Homeodomain-like superfamily protein

1

0

High-throughput

0.518

High

306437

O80748
B-box zinc finger family protein

1

7

High-throughput

0.512

High

1299788

Q8GXR6
Sequence-specific DNA binding transcription factor

1

3

High-throughput

0.512

High

1319616

LBD12
LOB domain-containing protein 12

1

2

High-throughput

0.512

High

1409284

STKLO
GLABROUS1 enhancer-binding protein

1

2

High-throughput

0.512

High

1421929

Q9C6K4
Transcription factor

1

1

High-throughput

0.512

High

1442003

Q9LMN5
F16F4.11 protein

1

1

High-throughput

0.512

High

1442854

Q9LSI4
NAC

1

5

High-throughput

0.512

High

1443680

Y3623
BTB/POZ domain-containing protein At3g56230

1

1

High-throughput

0.512

High

199598

STKLP
Probable transcription factor At4g00390

1

2

High-throughput

0.494

High

1423195

C3H14
Zinc finger CCCH domain-containing protein 14

1

6

High-throughput

0.494

High

1441550

LBD26
LOB domain-containing protein 26

1

2

High-throughput

0.494

High

1443696

LBD4
LOB domain-containing protein 4

1

2

High-throughput

0.494

High

1443699

RZ22A
Serine/arginine-rich splicing factor RSZ22A

1

1

High-throughput

0.494

High

1443705

WRK46
Probable WRKY transcription factor 46

1

3

High-throughput

0.494

High

102726

HHO5
Transcription factor HHO5

1

5

High-throughput

0.494

High

306600

MB101
Transcription factor MYB101

1

10

High-throughput

0.494

High

1442089

Q9LMY8
Basic leucine-zipper 58

1

11

High-throughput

0.481

High

1443684

NAC61
Putative NAC domain-containing protein 61

1

6

High-throughput

0.481

High

1443691

MB3R1
Transcription factor MYB3R-1

1

9

High-throughput

0.481

High

1201441

POT1A
Protection of telomeres protein 1a

1

0

Small-scale

0.460

High

4741

A0A178WP44
(thale cress) hypothetical protein

1

11

High-throughput

0.457

High

1300194

MYB60
Transcription factor MYB60

1

4

High-throughput

0.457

High

75217

B3H506
NAC domain containing protein 61

1

6

High-throughput

0.451

High

102901

F4JV48
Homeodomain-like protein

1

10

High-throughput

0.417

High

99832

F4HZ48
Forkhead-associated

1

0

High-throughput

0.292

High

1373064

C3H40
Zinc finger CCCH domain-containing protein 40

1

0

High-throughput

0.292

High

1443728

Q9ZW73
Cysteine/Histidine-rich C1 domain family protein

1

0

High-throughput

0.292

High

308209

Y2626
BTB/POZ domain-containing protein At2g46260

1

0

High-throughput

0.282

High

1421871

MTEFE
Transcription termination factor MTERF15, mitochondrial

1

0

High-throughput

0.282

High

1425663

Q9FIU1
AT5g54630/MRB17_13

1

0

High-throughput

0.282

High

1441530

C3H38
Zinc finger CCCH domain-containing protein 38

1

0

High-throughput

0.282

High


Service provided by Combinatics, Japan

Last updated: 11Aug2025