Protein: RNR
Ribonuclease R (RNase R) (EC 3.1.13.1) (Protein VacB)

Gene: RNR
Organism: Escherichia coli K-12
Interactions: 68
UniProt ID: P21499

Gene Ontology (top 5):
GO:0000175 - 3'-5'-RNA exonuclease activity
GO:0000932 - P-body
GO:0003723 - RNA binding
GO:0004540 - RNA nuclease activity
GO:0005829 - cytosol

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

461360

RS11
Small ribosomal subunit protein uS11

2

1

High-throughput

0.759

High

357083

RS7
Small ribosomal subunit protein uS7

2

0

High-throughput

0.748

High

599044

RNE
Ribonuclease E

2

0

High-throughput

0.748

High

599053

RL24
Large ribosomal subunit protein uL24

2

0

High-throughput

0.720

High

464337

CSPE
Cold shock-like protein CspE

3

4

High-throughput

0.643

High

465467

CSPC
Cold shock-like protein CspC

3

4

High-throughput

0.643

High

469428

RS1
Small ribosomal subunit protein bS1

1

2

High-throughput

0.625

High

461826

RS2
Small ribosomal subunit protein uS2

1

2

High-throughput

0.618

High

534553

SELB
Selenocysteine-specific elongation factor

2

1

High-throughput

0.611

High

599050

RLUB
Ribosomal large subunit pseudouridine synthase B

2

2

High-throughput

0.611

High

458982

IHFA
Integration host factor subunit alpha

2

1

High-throughput

0.588

High

460797

RL1
Large ribosomal subunit protein uL1

2

2

High-throughput

0.588

High

461449

RS13
Small ribosomal subunit protein uS13

2

1

High-throughput

0.588

High

461980

RS3
Small ribosomal subunit protein uS3

2

2

High-throughput

0.588

High

462429

RS8
Small ribosomal subunit protein uS8

2

2

High-throughput

0.588

High

462507

RS9
Small ribosomal subunit protein uS9

2

2

High-throughput

0.588

High

464311

CSPD
Cold shock-like protein CspD

2

4

High-throughput

0.588

High

467118

DBHA
DNA-binding protein HU-alpha

2

1

High-throughput

0.588

High

468022

RS15
Small ribosomal subunit protein uS15

2

1

High-throughput

0.588

High

599051

RL2
Large ribosomal subunit protein uL2

2

1

High-throughput

0.588

High

356957

RS6
Small ribosomal subunit protein bS6

2

0

High-throughput

0.585

High

599062

RLMI
Ribosomal RNA large subunit methyltransferase I

2

1

High-throughput

0.584

High

459553

IF3
Translation initiation factor IF-3 [Cleaved into: Translation initiation factor IF-3, N-terminally processed; Translation initiation factor IF-3S]

2

0

High-throughput

0.563

High

459993

RPPH
RNA pyrophosphohydrolase

2

0

High-throughput

0.563

High

460888

RL20
Large ribosomal subunit protein bL20

2

0

High-throughput

0.563

High

461589

RS18
Small ribosomal subunit protein bS18

2

0

High-throughput

0.563

High

462168

RS4
Small ribosomal subunit protein uS4

2

0

High-throughput

0.563

High

469285

RL21
Large ribosomal subunit protein bL21

2

0

High-throughput

0.563

High

469326

RL6
Large ribosomal subunit protein uL6

2

0

High-throughput

0.563

High

599058

RS21
Small ribosomal subunit protein bS21

2

0

High-throughput

0.563

High

465679

RLUC
Ribosomal large subunit pseudouridine synthase C

1

2

High-throughput

0.561

High

358400

RL15
Large ribosomal subunit protein uL15

2

1

High-throughput

0.558

High

599045

PSS
CDP-diacylglycerol--serine O-phosphatidyltransferase

1

0

High-throughput

0.537

High

599049

RLMN
Dual-specificity RNA methyltransferase RlmN

1

0

High-throughput

0.537

High

462351

RS5
Small ribosomal subunit protein uS5

1

3

High-throughput

0.536

High

599048

PGM
Phosphoglucomutase

1

1

High-throughput

0.536

High

599052

RL3
Large ribosomal subunit protein uL3

1

2

High-throughput

0.536

High

599061

RLMKL
Ribosomal RNA large subunit methyltransferase K/L [Includes: 23S rRNA m2G2445 methyltransferase

1

1

High-throughput

0.536

High

420999

CCA
Multifunctional CCA protein [Includes: CCA-adding enzyme

1

1

High-throughput

0.489

High

465152

DEAD
ATP-dependent RNA helicase DeaD

1

4

High-throughput

0.484

High

465557

RL13
Large ribosomal subunit protein uL13

1

3

High-throughput

0.484

High

467921

RL14
Large ribosomal subunit protein uL14

1

1

High-throughput

0.484

High

599055

RL22
Large ribosomal subunit protein uL22

1

3

High-throughput

0.484

High

468382

FKBX
FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase

1

0

High-throughput

0.479

High

458943

HFQ
RNA-binding protein Hfq

1

0

High-throughput

0.464

High

461213

RL9
Large ribosomal subunit protein bL9

1

0

High-throughput

0.464

High

461683

RS20
Small ribosomal subunit protein bS20

1

0

High-throughput

0.464

High

462941

TGT
Queuine tRNA-ribosyltransferase

1

0

High-throughput

0.464

High

464778

PHOL
PhoH-like protein

1

0

High-throughput

0.464

High

466040

YBCJ
Putative RNA-binding protein YbcJ

1

0

High-throughput

0.464

High

468533

SKP
Chaperone protein Skp

1

0

High-throughput

0.464

High

469650

YFIF
Uncharacterized tRNA/rRNA methyltransferase YfiF

1

0

High-throughput

0.464

High

599054

RL4
Large ribosomal subunit protein uL4

1

0

High-throughput

0.464

High

463626

YEEX
UPF0265 protein YeeX

1

0

High-throughput

0.458

High

464028

YFBU
UPF0304 protein YfbU

1

0

High-throughput

0.458

High

599057

GMHBB
D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase

1

0

High-throughput

0.458

High

599059

CSRA
Carbon storage regulator

1

0

High-throughput

0.458

High

466354

PCNB
Poly(A) polymerase I

1

1

Small-scale

0.445

High

599056

ISPF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

1

1

High-throughput

0.417

High

599060

YBJX
Uncharacterized protein YbjX

2

0

High-throughput

0.318

High

461543

RS16
Small ribosomal subunit protein bS16

2

0

High-throughput

0.307

High

467943

RL16
Large ribosomal subunit protein uL16

2

0

High-throughput

0.307

High

467977

RL23
Large ribosomal subunit protein uL23

2

0

High-throughput

0.307

High

599046

3PASE
Inorganic triphosphatase

1

0

High-throughput

0.279

Low

469376

RS14
Small ribosomal subunit protein uS14

1

0

High-throughput

0.253

Low

469120

SOHB
Probable protease SohB

1

0

High-throughput

0.249

Low

599063

YNCE
Uncharacterized protein YncE

1

0

High-throughput

0.249

Low

599047

INTA
Prophage integrase IntA

1

0

High-throughput

0.232

Low


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Last updated: 15 Jul 2024