Protein: PRP40
Pre-mRNA-processing protein PRP40

Gene: PRP40
Organism: Saccharomyces cerevisiae S288C
Interactions: 164
UniProt ID: P33203

Gene Ontology (top 5):
GO:0000243 - commitment complex
GO:0000395 - mRNA 5'-splice site recognition
GO:0000398 - mRNA splicing, via spliceosome
GO:0003723 - RNA binding
GO:0005634 - nucleus

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

703185

PRP40
Pre-mRNA-processing protein PRP40

2

6

Small-scale

0.776

High

703281

LUC7
Protein LUC7

7

2

Small-scale

0.751

High

703256

RU17
U1 small nuclear ribonucleoprotein 70 kDa homolog

7

9

Small-scale

0.745

High

703255

NAM8
Protein NAM8

6

3

Small-scale

0.730

High

703247

SNU71
U1 small nuclear ribonucleoprotein component SNU71

10

0

Small-scale

0.726

High

696625

RU1A
U1 small nuclear ribonucleoprotein A

8

0

Small-scale

0.720

High

703263

PRP42
U1 small nuclear ribonucleoprotein component PRP42

5

4

High-throughput

0.712

High

703216

PRP39
Pre-mRNA-processing factor 39

4

3

High-throughput

0.694

High

703190

NCBP1
Nuclear cap-binding protein complex subunit 1

4

1

High-throughput

0.691

High

703220

RSMB
Small nuclear ribonucleoprotein-associated protein B

4

5

High-throughput

0.691

High

703259

SMD1
Small nuclear ribonucleoprotein Sm D1

4

1

High-throughput

0.691

High

703221

RUXG
Small nuclear ribonucleoprotein G

4

2

High-throughput

0.683

High

703253

RUXF
Small nuclear ribonucleoprotein F

4

4

High-throughput

0.683

High

703264

SNU56
56 kDa U1 small nuclear ribonucleoprotein component

5

0

High-throughput

0.682

High

703283

NCBP2
Nuclear cap-binding protein subunit 2

4

5

Small-scale

0.676

High

703271

RU1C
U1 small nuclear ribonucleoprotein C

4

0

High-throughput

0.664

High

703233

SMD3
Small nuclear ribonucleoprotein Sm D3

3

6

High-throughput

0.662

High

703288

BBP
Branchpoint-bridging protein

3

5

Small-scale

0.661

High

375336

RPB1
DNA-directed RNA polymerase II subunit RPB1

2

5

Small-scale

0.619

High

703194

MUD2
Splicing factor MUD2

3

0

Small-scale

0.613

High

703274

SMD2
Small nuclear ribonucleoprotein Sm D2

2

1

High-throughput

0.601

High

703293

RUXE
Small nuclear ribonucleoprotein E

2

2

High-throughput

0.601

High

703186

PRP8
Pre-mRNA-splicing factor 8

2

2

Small-scale

0.594

High

493556

HSP72
Heat shock protein SSA2

2

8

High-throughput

0.585

High

650260

SPT5
Transcription elongation factor SPT5

2

1

Small-scale

0.584

High

703260

CUS1
Cold sensitive U2 snRNA suppressor 1

2

4

High-throughput

0.584

High

703284

RU2A
U2 small nuclear ribonucleoprotein A'

2

10

Small-scale

0.584

High

557971

RPB3
DNA-directed RNA polymerase II subunit RPB3

2

0

Small-scale

0.559

High

376704

PABP
Polyadenylate-binding protein, cytoplasmic and nuclear

1

2

High-throughput

0.536

High

490758

HSP71
Heat shock protein SSA1

1

8

High-throughput

0.536

High

703291

CLF1
Pre-mRNA-splicing factor CLF1

1

3

Small-scale

0.527

High

389069

SYDC
Aspartate--tRNA ligase, cytoplasmic

1

1

High-throughput

0.501

High

589421

PRP2
Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2

1

8

High-throughput

0.501

High

613800

TKT1
Transketolase 1

1

1

High-throughput

0.501

High

703187

LHP1
La protein homolog

1

3

High-throughput

0.501

High

703191

SIP2
SNF1 protein kinase subunit beta-2

1

1

High-throughput

0.501

High

703203

RCK1
Serine/threonine-protein kinase RCK1

1

4

High-throughput

0.501

High

703205

YHR2
Uncharacterized trans-sulfuration enzyme YHR112C

1

1

High-throughput

0.501

High

703209

DOG2
2-deoxyglucose-6-phosphate phosphatase 2

1

3

High-throughput

0.501

High

703215

STM1
Suppressor protein STM1

1

1

High-throughput

0.501

High

703217

NPT1
Nicotinate phosphoribosyltransferase

1

1

High-throughput

0.501

High

703222

EIF3I
Eukaryotic translation initiation factor 3 subunit I

1

5

High-throughput

0.501

High

703232

ELP2
Elongator complex protein 2

1

4

High-throughput

0.501

High

703236

AIP1
Actin-interacting protein 1

1

4

High-throughput

0.501

High

703237

YJ66
Uncharacterized oxidoreductase YJR096W

1

1

High-throughput

0.501

High

703241

RIR4
Ribonucleoside-diphosphate reductase small chain 2

1

2

High-throughput

0.501

High

703242

UBP15
Ubiquitin carboxyl-terminal hydrolase 15

1

2

High-throughput

0.501

High

703246

STR3
Cystathionine beta-lyase

1

1

High-throughput

0.501

High

703251

UBP10
Ubiquitin carboxyl-terminal hydrolase 10

1

4

High-throughput

0.501

High

703257

CTF4
DNA polymerase alpha-binding protein

1

5

High-throughput

0.501

High

703258

NOP3
Serine/arginine

1

7

High-throughput

0.501

High

703265

RUB1
NEDD8-like protein RUB1

1

3

High-throughput

0.501

High

703272

KYNU
Kynureninase

1

1

High-throughput

0.501

High

703287

HOSM
Homocitrate synthase, mitochondrial

1

1

High-throughput

0.501

High

703292

PRR2
Serine/threonine-protein kinase PRR2

1

3

High-throughput

0.501

High

703212

YHS7
Uncharacterized protein YHR127W

1

0

High-throughput

0.493

High

703244

PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2

1

1

High-throughput

0.489

High

686834

MED16
Mediator of RNA polymerase II transcription subunit 16

1

0

High-throughput

0.486

High

703189

NUF2
Kinetochore protein NUF2

1

3

High-throughput

0.481

High

345211

IPA3
Protease A inhibitor 3

1

0

High-throughput

0.480

High

393893

PHR
Deoxyribodipyrimidine photo-lyase, mitochondrial

1

0

High-throughput

0.480

High

488463

YEY2
Uncharacterized protein YER152C

1

0

High-throughput

0.480

High

548607

IDI1
Isopentenyl-diphosphate delta-isomerase

1

0

High-throughput

0.480

High

593304

RPAB3
DNA-directed RNA polymerases I, II, and III subunit RPABC3

1

0

High-throughput

0.480

High

634336

POF1
Nicotinamide mononucleotide adenylyltransferase

1

0

High-throughput

0.480

High

635103

YCQ6
Uncharacterized protein YCR016W

1

0

High-throughput

0.480

High

703228

MVP1
Sorting nexin MVP1

1

0

High-throughput

0.480

High

703249

YG2W
Uncharacterized protein YGR111W

1

0

High-throughput

0.480

High

703262

OYE2
NADPH dehydrogenase 2

1

0

High-throughput

0.480

High

703278

ARR2
Arsenical-resistance protein 2

1

0

High-throughput

0.480

High

703286

LKHA4
Leucine aminopeptidase 2

1

0

High-throughput

0.480

High

598569

PRP5
Pre-mRNA-processing ATP-dependent RNA helicase PRP5

1

8

High-throughput

0.479

High

661766

TF2B
Transcription initiation factor IIB

1

1

High-throughput

0.479

High

693971

PUB1
Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

1

8

High-throughput

0.479

High

703268

RSE1
Pre-mRNA-splicing factor RSE1

1

7

High-throughput

0.479

High

703279

PRP11
Pre-mRNA-splicing factor PRP11

1

3

High-throughput

0.479

High

703294

SNU66
66 kDa U4/U6.U5 small nuclear ribonucleoprotein component

1

2

Small-scale

0.479

High

703219

SPC25
Kinetochore protein SPC25

1

0

High-throughput

0.460

High

703195

NTR2
Pre-mRNA-splicing factor NTR2

1

0

High-throughput

0.458

High

703204

STS1
Tethering factor for nuclear proteasome STS1

1

0

High-throughput

0.458

High

342897

ENO2
Enolase 2

1

2

High-throughput

0.457

High

388959

SYTC
Threonine--tRNA ligase, cytoplasmic

1

1

High-throughput

0.457

High

413407

RS14A
Small ribosomal subunit protein uS11A

1

1

High-throughput

0.457

High

417573

PHSG
Glycogen phosphorylase

1

1

High-throughput

0.457

High

420260

CALM
Calmodulin

1

3

High-throughput

0.457

High

501282

PCKA
Phosphoenolpyruvate carboxykinase

1

1

High-throughput

0.457

High

505156

PYC1
Pyruvate carboxylase 1

1

1

High-throughput

0.457

High

519917

TCPA
T-complex protein 1 subunit alpha

1

1

High-throughput

0.457

High

546519

AMPD
AMP deaminase

1

1

High-throughput

0.457

High

562351

PFKA2
ATP-dependent 6-phosphofructokinase subunit beta

1

3

High-throughput

0.457

High

625879

EFGM
Elongation factor G, mitochondrial

1

2

High-throughput

0.457

High

625970

PTP1
Tyrosine-protein phosphatase 1

1

9

High-throughput

0.457

High

629802

SYNM
Asparagine--tRNA ligase, mitochondrial

1

1

High-throughput

0.457

High

634088

YCC1
Putative uncharacterized protein YCL021W

1

3

High-throughput

0.457

High

677503

MLS1
Malate synthase 1

1

1

High-throughput

0.457

High

689320

ARP2
Actin-related protein 2

1

10

High-throughput

0.457

High

689714

MDHP
Malate dehydrogenase, peroxisomal

1

1

High-throughput

0.457

High

696919

FRDS
Fumarate reductase 1

1

1

High-throughput

0.457

High

703192

THI80
Thiamine pyrophosphokinase

1

1

High-throughput

0.457

High

703196

TGL4
Triacylglycerol lipase 4

1

1

High-throughput

0.457

High

703198

ADCS
Aminodeoxychorismate synthase

1

2

High-throughput

0.457

High

703200

YBQ6
Uncharacterized glycosyl hydrolase YBR056W

1

1

High-throughput

0.457

High

703201

MAL32
Alpha-glucosidase MAL32

1

2

High-throughput

0.457

High

703206

6PGD1
6-phosphogluconate dehydrogenase, decarboxylating 1

1

2

High-throughput

0.457

High

703208

TDA3
Putative oxidoreductase TDA3

1

1

High-throughput

0.457

High

703227

INP51
Phosphatidylinositol 4,5-bisphosphate 5-phosphatase INP51

1

1

High-throughput

0.457

High

703235

SYEC
Glutamate--tRNA ligase, cytoplasmic

1

1

High-throughput

0.457

High

703245

MALX3
Oligo-1,6-glucosidase IMA1

1

2

High-throughput

0.457

High

703250

YNW6
Putative uncharacterized protein YNL226W

1

1

High-throughput

0.457

High

703254

PURA
Adenylosuccinate synthetase

1

1

High-throughput

0.457

High

703270

EIF3J
Eukaryotic translation initiation factor 3 subunit J

1

1

High-throughput

0.457

High

703290

YD061
Uncharacterized ABC transporter ATP-binding protein YDR061W

1

1

High-throughput

0.457

High

366041

HSP82
ATP-dependent molecular chaperone HSP82

1

4

High-throughput

0.445

High

449988

HSP73
Heat shock protein SSA3

1

8

High-throughput

0.445

High

510750

SSB1
Ribosome-associated molecular chaperone SSB1

1

6

High-throughput

0.445

High

692276

PRP19
Pre-mRNA-processing factor 19

1

2

Small-scale

0.445

High

694384

HSP7F
Heat shock protein homolog SSE1

1

12

High-throughput

0.445

High

703275

SP382
Pre-mRNA-splicing factor SPP382

1

0

High-throughput

0.438

High

703199

YPK3
Serine/threonine-protein kinase YPK3

1

1

High-throughput

0.437

High

703248

EIF2A
Eukaryotic translation initiation factor 2A

1

1

High-throughput

0.437

High

627870

SIS1
Protein SIS1

1

0

High-throughput

0.426

High

543459

HSC82
ATP-dependent molecular chaperone HSC82

1

4

High-throughput

0.407

High

703188

HSP78
Heat shock protein 78, mitochondrial

1

1

High-throughput

0.407

High

703218

HSP7E
Heat shock protein SSC3, mitochondrial

1

7

High-throughput

0.407

High

703223

TGL3
Triacylglycerol lipase 3

1

1

High-throughput

0.373

High

703226

YIG0
Uncharacterized protein YIL060W

1

1

High-throughput

0.373

High

703224

UTP18
U3 small nucleolar RNA-associated protein 18

1

0

High-throughput

0.279

Low

141782

YL269
Putative uncharacterized protein YLR269C

1

0

High-throughput

0.261

Low

343818

SYMC
Methionine--tRNA ligase, cytoplasmic

1

0

High-throughput

0.261

Low

507795

HEM6
Oxygen-dependent coproporphyrinogen-III oxidase

1

0

High-throughput

0.261

Low

618224

AATC
Aspartate aminotransferase, cytoplasmic

1

0

High-throughput

0.261

Low

690379

ERG24
Delta(14)-sterol reductase ERG24

1

0

High-throughput

0.261

Low

698391

EMP24
Endosomal protein P24B

1

0

High-throughput

0.261

Low

703193

MCR1
NADH-cytochrome b5 reductase 2

1

0

High-throughput

0.261

Low

703202

GRPE
GrpE protein homolog, mitochondrial

1

0

High-throughput

0.261

Low

703207

YHE2
Putative uncharacterized protein YHL042W

1

0

High-throughput

0.261

Low

703210

PANE
2-dehydropantoate 2-reductase

1

0

High-throughput

0.261

Low

703211

HTD2
Hydroxyacyl-thioester dehydratase type 2, mitochondrial

1

0

High-throughput

0.261

Low

703213

YH02
Uncharacterized protein YHR202W

1

0

High-throughput

0.261

Low

703214

LYS1
Saccharopine dehydrogenase [NAD(+), L-lysine-forming]

1

0

High-throughput

0.261

Low

703225

YIK8
Putative zinc metalloproteinase YIL108W

1

0

High-throughput

0.261

Low

703229

VATH
V-type proton ATPase subunit H

1

0

High-throughput

0.261

Low

703230

PTE1
Peroxisomal acyl-coenzyme A thioester hydrolase 1

1

0

High-throughput

0.261

Low

703234

MTHR1
Methylenetetrahydrofolate reductase 1

1

0

High-throughput

0.261

Low

703238

PXP2
Peroxisomal protein 2

1

0

High-throughput

0.261

Low

703239

2NDP
Putative nitronate monooxygenase

1

0

High-throughput

0.261

Low

703240

YPT11
GTP-binding protein YPT11

1

0

High-throughput

0.261

Low

703252

IDHH
Isocitrate dehydrogenase [NADP]

1

0

High-throughput

0.261

Low

703261

NGL3
Probable RNA exonuclease NGL3

1

0

High-throughput

0.261

Low

703266

YM54
Uncharacterized protein YMR196W

1

0

High-throughput

0.261

Low

703267

HFD1
Fatty aldehyde dehydrogenase HFD1

1

0

High-throughput

0.261

Low

703269

GSF2
Glucose-signaling factor 2

1

0

High-throughput

0.261

Low

703273

PEX30
Peroxisomal membrane protein PEX30

1

0

High-throughput

0.261

Low

703276

LOA1
Lysophosphatidic acid:oleoyl-CoA acyltransferase 1

1

0

High-throughput

0.261

Low

703277

YP147
Lipid droplet-associated triacylglycerol lipase

1

0

High-throughput

0.261

Low

703280

DLHH
Putative carboxymethylenebutenolidase

1

0

High-throughput

0.261

Low

703282

FOLE
Folylpolyglutamate synthase

1

0

High-throughput

0.261

Low

703285

SELO
Protein adenylyltransferase SelO, mitochondrial

1

0

High-throughput

0.261

Low

703289

COX17
Cytochrome c oxidase copper chaperone

1

0

High-throughput

0.261

Low

700818

SMY2
Protein SMY2

1

0

High-throughput

0.249

Low

703197

RM10
Large ribosomal subunit protein uL15m

1

0

High-throughput

0.249

Low

703243

RL4P
Large ribosomal subunit protein uL4m

1

0

High-throughput

0.249

Low

703231

MDJ2
Mitochondrial DnaJ homolog 2

1

0

High-throughput

0.232

Low


Service provided by Combinatics, Japan

Last updated: 15 Jul 2024