HitPredict

Interactor 1: LSM1B (Q8LFL8)
Sm-like protein LSM1B (AtLSM1b)
Gene: LSM1B

Interactor 2: LSM7 (Q9SI54)
Sm-like protein LSM7 (AtLSM7) (Protein EMBRYO DEFECTIVE 2816) (U6 snRNA-associated Sm-like protein LSM7)
Gene: LSM7

Species: Arabidopsis thaliana

Source: intact

Category: High-throughput

Confidence: High

Method score	Annotation score	Interaction score
0.48	1.00	0.698

Property	Details
Experiments	21798944
Identification Methods	two hybrid, two hybrid array
Interaction Type	direct interaction, physical association

Property	Details
Interacting Pfam domains	LSM~LSM
Common GO terms	GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000932 - P-body GO:0003723 - RNA binding GO:0005829 - cytosol GO:1990726 - Lsm1-7-Pat1 complex
Homologous interactions	19

Homologous interactions

Color coding for hit scores

	1 128 At			1 99
+	Hs
		178057 LSM1_HUMAN (7-123): 2.32e-29: 104: 46.15		LSM7_HUMAN (4-97): 1.13e-33: 113: 55.32
+	Sc
		864108 LSM1_YEAST (12-127): 5.33e-32: 112: 37.90		LSM1_YEAST (7-99): 5e-24: 91.1: 24.73
+	Sc
		864121 LSM1_YEAST (12-127): 5.33e-32: 112: 37.90		LSM7_YEAST (3-87): 2.9e-24: 90.3: 46.59
+	Ce
		198255 O18694_CAEEL (2-88): 2.39e-25: 93.5: 18.39		Q23543_CAEEL (4-97): 1.58e-31: 108: 56.38
+	Hs
		177994 LSM1_HUMAN (7-123): 2.32e-29: 104: 46.15		RSMB_HUMAN (3-92): 2.67e-25: 96.1: 25.00
+	Dm
		1478481 Q9W2K2_DROME (7-126): 4.09e-26: 96.6: 44.00		Q9VJI7_DROME (4-96): 9.41e-30: 103: 58.51
+	Sc
		864124 LSM1_YEAST (12-127): 5.33e-32: 112: 37.90		LSM3_YEAST (6-90): 1.9e-22: 84.9: 34.88
+	Hs
		178010 LSM1_HUMAN (7-123): 2.32e-29: 104: 46.15		RUXG_HUMAN (3-86): 3.61e-24: 88.8: 34.52
+	Hs
		574210 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		RSMB_HUMAN (3-92): 2.67e-25: 96.1: 25.00
+	Sc
		818463 LSM1_YEAST (12-127): 5.33e-32: 112: 37.90		LSM5_YEAST (1-82): 4.17e-20: 78.7: 26.51
+	Hs
		974112 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		RUXG_HUMAN (3-86): 3.61e-24: 88.8: 34.52
+	Hs
		178011 LSM1_HUMAN (7-123): 2.32e-29: 104: 46.15		LSM3_HUMAN (6-83): 3.14e-20: 79.5: 30.95
+	Mm
		974306 LSM1_MOUSE (7-123): 8.77e-29: 103: 45.30		LSM3_MOUSE (6-83): 3.14e-20: 79.5: 30.95
+	Hs
		71570 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		RUXGL_HUMAN (3-86): 1.77e-22: 84.5: 33.33
+	Hs
		344531 RSMN_HUMAN (8-89): 1.4e-24: 95.4: 25.00		LSM8_HUMAN (11-90): 6.69e-22: 83.7: 33.75
+	Dm
		1303486 Q9W2K2_DROME (7-126): 4.09e-26: 96.6: 44.00		Q8IMX8_DROME (3-86): 8.53e-21: 81.1: 31.11
+	Hs
		71558 RSMB_HUMAN (8-89): 1.03e-23: 93.1: 25.00		RUXGL_HUMAN (3-86): 1.77e-22: 84.5: 33.33
+	Dm
		1489260 Q9W2K2_DROME (7-126): 4.09e-26: 96.6: 44.00		Q9W087_DROME (11-89): 1.49e-20: 80.3: 29.11
+	Mm
		974304 LSM8_MOUSE (11-89): 3.34e-25: 93.1: 38.75		LSM3_MOUSE (6-83): 3.14e-20: 79.5: 30.95