HitPredict

Interactor 1: RPOB (P0A8V2)
DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta)
Gene: RPOB

Interactor 2: RP54 (P24255)
RNA polymerase sigma-54 factor
Gene: rpoN

Species: Escherichia coli K-12

Source: intact

Category: High-throughput

Confidence: High

Method score Annotation score Interaction score
0.62 1.00 0.789

The method score is based on:

Property Details
Experiments 16606699, 15690043
Identification Methods affinity chromatography technology, tandem affinity purification, pull down
Interaction Type physical association, association

The annotation score is based on:

Property Details
Interacting Pfam domains RNA_pol_Rpb2_6~Sigma54_CBD, RNA_pol_Rpb2_6~Sigma54_DBD, RNA_pol_Rpb2_7~Sigma54_CBD
Common GO terms GO:0000345 - cytosolic DNA-directed RNA polymerase complex
GO:0006352 - DNA-templated transcription initiation
GO:0042128 - nitrate assimilation
GO:0048870 - cell motility
GO:0090605 - submerged biofilm formation
and 1 others

more...
Homologous interactions 1

Homologous interactions

Color coding for hit scores

1 1342
Ec

1 477
+ Nv

Service provided by Combinatics, Japan

Last updated: 15 Jul 2024