Protein: RUXE
Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E) (SmE)

Gene: RUXE, SME1
Organism: Saccharomyces cerevisiae S288C
Interactions: 61
UniProt ID: Q12330

Gene Ontology (top 5):
GO:0000243 - commitment complex
GO:0000245 - spliceosomal complex assembly
GO:0000387 - spliceosomal snRNP assembly
GO:0000395 - mRNA 5'-splice site recognition
GO:0000398 - mRNA splicing, via spliceosome

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

873680

RUXF
Small nuclear ribonucleoprotein F

6

8

Small-scale

0.950

High

770348

RUXG
Small nuclear ribonucleoprotein G

5

11

Small-scale

0.927

High

997046

RU2A
U2 small nuclear ribonucleoprotein A'

5

4

Small-scale

0.908

High

986610

SMD2
Small nuclear ribonucleoprotein Sm D2

4

1

High-throughput

0.881

High

766977

RSMB
Small nuclear ribonucleoprotein-associated protein B

3

2

High-throughput

0.839

High

795435

SMD3
Small nuclear ribonucleoprotein Sm D3

3

14

Small-scale

0.839

High

704737

PRP8
Pre-mRNA-splicing factor 8

3

1

High-throughput

0.830

High

731787

SN114
Pre-mRNA-splicing factor SNU114

3

2

High-throughput

0.830

High

970253

SMD1
Small nuclear ribonucleoprotein Sm D1

2

1

High-throughput

0.776

High

884839

LSM3
U6 snRNA-associated Sm-like protein LSm3

2

13

Small-scale

0.768

High

586541

PRP9
Pre-mRNA-splicing factor PRP9

2

1

High-throughput

0.759

High

991488

LUC7
Protein LUC7

2

0

High-throughput

0.716

High

1015486

RUXE
Small nuclear ribonucleoprotein E

1

2

Small-scale

0.710

High

962604

RU17
U1 small nuclear ribonucleoprotein 70 kDa homolog

1

3

High-throughput

0.665

High

697278

BRR2
Pre-mRNA-splicing helicase BRR2

4

4

Small-scale

0.659

High

977089

CEF1
Pre-mRNA-splicing factor CEF1

3

2

Small-scale

0.650

High

586453

PRP6
Pre-mRNA-splicing factor 6

3

5

High-throughput

0.643

High

589109

PRP4
U4/U6 small nuclear ribonucleoprotein PRP4

3

3

High-throughput

0.643

High

696679

RU1A
U1 small nuclear ribonucleoprotein A

3

0

Small-scale

0.632

High

985139

RU1C
U1 small nuclear ribonucleoprotein C

1

0

High-throughput

0.631

High

746366

LSM2
U6 snRNA-associated Sm-like protein LSm2

1

10

Small-scale

0.621

High

976056

PRP3
U4/U6 small nuclear ribonucleoprotein PRP3

1

1

High-throughput

0.618

High

703293

PRP40
Pre-mRNA-processing protein PRP40

2

2

High-throughput

0.601

High

830833

PRP31
Pre-mRNA-processing factor 31

2

1

High-throughput

0.601

High

836951

SF3B1
U2 snRNP component HSH155

2

2

High-throughput

0.588

High

980240

RSE1
Pre-mRNA-splicing factor RSE1

2

1

High-throughput

0.588

High

1015487

SNU66
66 kDa U4/U6.U5 small nuclear ribonucleoprotein component

2

1

Small-scale

0.584

High

554773

HSP26
Heat shock protein 26

2

0

High-throughput

0.563

High

710283

MED20
Mediator of RNA polymerase II transcription subunit 20

2

0

High-throughput

0.563

High

566245

EST1
Telomere elongation protein EST1

2

0

Small-scale

0.559

High

710240

NCBP1
Nuclear cap-binding protein complex subunit 1

2

0

Small-scale

0.559

High

960483

NAM8
Protein NAM8

2

0

High-throughput

0.559

High

996593

NCBP2
Nuclear cap-binding protein subunit 2

2

0

High-throughput

0.559

High

513234

SSB1
Ribosome-associated molecular chaperone SSB1

2

2

High-throughput

0.552

High

589466

PRP2
Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2

1

2

High-throughput

0.515

High

622353

PRP22
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22

1

2

Small-scale

0.501

High

866354

CARME
Carnosine N-methyltransferase

1

0

High-throughput

0.493

High

971706

CUS1
Cold sensitive U2 snRNA suppressor 1

1

1

High-throughput

0.479

High

977596

PRP42
U1 small nuclear ribonucleoprotein component PRP42

1

7

High-throughput

0.479

High

989233

DIB1
Spliceosomal protein DIB1

1

2

High-throughput

0.479

High

1015444

CLF1
Pre-mRNA-splicing factor CLF1

1

6

Small-scale

0.479

High

692098

NAB2
Nuclear polyadenylated RNA-binding protein NAB2

1

0

High-throughput

0.458

High

732408

MUD2
Splicing factor MUD2

1

0

High-throughput

0.458

High

733103

NTR2
Pre-mRNA-splicing factor NTR2

1

0

High-throughput

0.458

High

747917

POP7
Ribonucleases P/MRP protein subunit POP7

1

0

Small-scale

0.458

High

860220

POP6
Ribonucleases P/MRP protein subunit POP6

1

0

Small-scale

0.458

High

977619

SNU56
56 kDa U1 small nuclear ribonucleoprotein component

1

0

High-throughput

0.458

High

986238

TERT
Telomerase reverse transcriptase

1

0

Small-scale

0.458

High

492862

HSP71
Heat shock protein SSA1

1

1

High-throughput

0.445

High

692378

PRP19
Pre-mRNA-processing factor 19

1

3

Small-scale

0.445

High

695825

HSP7F
Heat shock protein homolog SSE1

1

3

High-throughput

0.445

High

766279

HSP7E
Heat shock protein SSC3, mitochondrial

1

3

High-throughput

0.445

High

769820

SSB2
Ribosome-associated molecular chaperone SSB2

1

2

High-throughput

0.445

High

985293

HSP7Q
Iron-sulfur cluster biogenesis chaperone, mitochondrial

1

3

High-throughput

0.445

High

1015113

PER33
Pore and endoplasmic reticulum protein of 33 kDa

1

1

Small-scale

0.437

High

1015226

POM33
Pore membrane protein of 33 kDa

1

1

Small-scale

0.437

High

705815

HSP78
Heat shock protein 78, mitochondrial

1

0

High-throughput

0.426

High

345253

ATIF
F(1)-ATPase inhibitor IF(1), mitochondrial

1

0

High-throughput

0.269

Low

996428

RRG7
Required for respiratory growth protein 7, mitochondrial

1

0

High-throughput

0.269

Low

1015407

YOR97
Uncharacterized protein YOR097C

1

0

High-throughput

0.269

Low


Service provided by Combinatics, Japan

Last updated: 15 Jul 2024