Protein: RM04
Large ribosomal subunit protein uL29m (54S ribosomal protein L4, mitochondrial) (YmL4)

Gene: RM04, MRPL4
Organism: Saccharomyces cerevisiae S288C
Interactions: 123
UniProt ID: P36517

Gene Ontology (top 5):
GO:0003735 - structural constituent of ribosome
GO:0005739 - mitochondrion
GO:0005743 - mitochondrial inner membrane
GO:0005762 - mitochondrial large ribosomal subunit
GO:0032543 - mitochondrial translation

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

736235

RM41
Large ribosomal subunit protein uL23m

5

1

Small-scale

0.919

High

783841

RM27
Large ribosomal subunit protein mL41

4

0

Small-scale

0.840

High

725705

RM09
Large ribosomal subunit protein uL3m

3

1

High-throughput

0.662

High

783837

RM10
Large ribosomal subunit protein uL15m

3

1

High-throughput

0.662

High

783850

RM16
Large ribosomal subunit protein uL16m

3

1

High-throughput

0.662

High

783852

MBA1
Inner membrane mitoribosome receptor MBA1, mitochondrial

4

0

Small-scale

0.648

High

783877

RM19
Large ribosomal subunit protein uL11m

3

1

High-throughput

0.643

High

783878

RM22
Large ribosomal subunit protein uL22m

3

2

Small-scale

0.640

High

638901

CBP3
Protein CBP3, mitochondrial

3

0

Small-scale

0.622

High

783872

RL4P
Large ribosomal subunit protein uL4m

2

1

High-throughput

0.611

High

678580

IMG2
Large ribosomal subunit protein mL49

2

2

High-throughput

0.601

High

783871

PRP31
Pre-mRNA-processing factor 31

2

0

High-throughput

0.595

High

410064

RL25
Large ribosomal subunit protein uL23

1

0

High-throughput

0.586

High

783847

RM40
Large ribosomal subunit protein uL24m

1

0

High-throughput

0.586

High

657431

RM25
Large ribosomal subunit protein mL59

2

0

Small-scale

0.585

High

678164

IMG1
Large ribosomal subunit protein bL19m

2

0

High-throughput

0.585

High

783896

MHR1
Large ribosomal subunit protein mL67

2

0

High-throughput

0.585

High

783884

RM13
Large ribosomal subunit protein mL50

2

0

Small-scale

0.559

High

757961

PRX1
Peroxiredoxin PRX1, mitochondrial

1

0

Small-scale

0.513

High

448700

SNF1
Carbon catabolite-derepressing protein kinase

1

0

High-throughput

0.480

High

433576

RL26A
Large ribosomal subunit protein uL24A

1

2

High-throughput

0.479

High

453138

QCR1
Cytochrome b-c1 complex subunit 1, mitochondrial

1

2

Small-scale

0.479

High

512380

RS6A
Small ribosomal subunit protein eS6A

1

1

High-throughput

0.479

High

512947

RS8A
Small ribosomal subunit protein eS8A

1

1

High-throughput

0.479

High

554588

RM02
Large ribosomal subunit protein bL27m

1

1

High-throughput

0.479

High

647899

RM08
Large ribosomal subunit protein bL17m

1

2

High-throughput

0.479

High

743743

RML2
Large ribosomal subunit protein uL2m

1

1

High-throughput

0.479

High

783843

RM17
Large ribosomal subunit protein mL46

1

1

High-throughput

0.479

High

783861

MAM33
Mitochondrial acidic protein MAM33

1

1

Small-scale

0.479

High

783873

MNP1
Large ribosomal subunit protein bL12m

1

1

High-throughput

0.479

High

783891

RM01
Large ribosomal subunit protein uL1m

1

1

High-throughput

0.479

High

783893

RM51
Large ribosomal subunit protein mL43

1

1

High-throughput

0.479

High

783895

YLH47
LETM1 domain-containing protein YLH47, mitochondrial

1

1

Small-scale

0.479

High

783897

RM35
Large ribosomal subunit protein mL38

1

2

High-throughput

0.479

High

783900

MDM38
Mitochondrial distribution and morphology protein 38

1

1

Small-scale

0.479

High

783906

RM23
Large ribosomal subunit protein uL13m

1

2

High-throughput

0.479

High

783882

RU17
U1 small nuclear ribonucleoprotein 70 kDa homolog

1

1

High-throughput

0.464

High

94603

CMC1
Truncated non-functional calcium-binding mitochondrial carrier SAL1-1

1

0

High-throughput

0.458

High

149700

RS9A
Small ribosomal subunit protein uS4A

1

0

High-throughput

0.458

High

383641

RS17A
Small ribosomal subunit protein eS17A

1

0

High-throughput

0.458

High

435012

RS3
Small ribosomal subunit protein uS3

1

0

High-throughput

0.458

High

435901

RS13
Small ribosomal subunit protein uS15

1

0

High-throughput

0.458

High

441846

RS14A
Small ribosomal subunit protein uS11A

1

0

High-throughput

0.458

High

450440

CY1
Cytochrome c1, heme protein, mitochondrial

1

0

High-throughput

0.458

High

453051

CBP6
Cytochrome B pre-mRNA-processing protein 6

1

0

High-throughput

0.458

High

455000

RS19A
Small ribosomal subunit protein eS19A

1

0

High-throughput

0.458

High

470233

PT111
Protein PET111, mitochondrial

1

0

High-throughput

0.458

High

502982

RS22A
Small ribosomal subunit protein uS8A

1

0

High-throughput

0.458

High

504159

RL31A
Large ribosomal subunit protein eL31A

1

0

High-throughput

0.458

High

510397

HSP77
Import motor subunit, mitochondrial

1

0

High-throughput

0.458

High

514582

RS18A
Small ribosomal subunit protein uS13A

1

0

High-throughput

0.458

High

561678

RPOM
DNA-directed RNA polymerase, mitochondrial

1

0

Small-scale

0.458

High

569481

RM31
Large ribosomal subunit protein mL60

1

0

High-throughput

0.458

High

628142

RM33
Large ribosomal subunit protein uL30m

1

0

High-throughput

0.458

High

647969

RM20
Large ribosomal subunit protein mL58

1

0

High-throughput

0.458

High

672526

RM32
Large ribosomal subunit protein bL32m

1

0

High-throughput

0.458

High

674554

RS2
Small ribosomal subunit protein uS5

1

0

High-throughput

0.458

High

677071

MGR1
Mitochondrial inner membrane i-AAA protease supercomplex subunit MGR1

1

0

High-throughput

0.458

High

689389

RS7A
Small ribosomal subunit protein eS7A

1

0

High-throughput

0.458

High

736328

RM49
Large ribosomal subunit protein mL61

1

0

High-throughput

0.458

High

746796

TIM23
Mitochondrial import inner membrane translocase subunit TIM23

1

0

High-throughput

0.458

High

747213

RM06
Large ribosomal subunit protein uL6m

1

0

High-throughput

0.458

High

747301

RSSA1
Small ribosomal subunit protein uS2A

1

0

High-throughput

0.458

High

753305

RS3A1
Small ribosomal subunit protein eS1A

1

0

High-throughput

0.458

High

778197

RM38
Large ribosomal subunit protein uL14m

1

0

High-throughput

0.458

High

778265

RS27A
Small ribosomal subunit protein eS27A

1

0

High-throughput

0.458

High

783770

RM03
Large ribosomal subunit protein mL44

1

0

High-throughput

0.458

High

783836

RM07
Large ribosomal subunit protein uL5m

1

0

High-throughput

0.458

High

783838

RM11
Large ribosomal subunit protein uL10m

1

0

High-throughput

0.458

High

783839

RM15
Large ribosomal subunit protein mL57

1

0

High-throughput

0.458

High

783840

RM24
Large ribosomal subunit protein bL28m

1

0

High-throughput

0.458

High

783842

RM28
Large ribosomal subunit protein mL40

1

0

High-throughput

0.458

High

783844

RM36
Large ribosomal subunit protein bL31m

1

0

High-throughput

0.458

High

783845

RM37
Large ribosomal subunit protein mL54

1

0

High-throughput

0.458

High

783846

RM39
Large ribosomal subunit protein bL33m

1

0

High-throughput

0.458

High

783848

NAT2
Putative N-terminal acetyltransferase 2

1

0

High-throughput

0.458

High

783853

CLPX
ATP-dependent clpX-like chaperone, mitochondrial

1

0

High-throughput

0.458

High

783854

RS20
Small ribosomal subunit protein uS10

1

0

High-throughput

0.458

High

783856

COX15
Heme A synthase COX15

1

0

High-throughput

0.458

High

783858

MMF1
Protein MMF1, mitochondrial

1

0

High-throughput

0.458

High

783859

NDH1
External NADH-ubiquinone oxidoreductase 1, mitochondrial

1

0

High-throughput

0.458

High

783860

COA1
Cytochrome c oxidase assembly factor 1

1

0

High-throughput

0.458

High

783863

RN49
Large ribosomal subunit protein bL21m

1

0

High-throughput

0.458

High

783864

PTE1
Peroxisomal acyl-coenzyme A thioester hydrolase 1

1

0

High-throughput

0.458

High

783865

YFL5
Uncharacterized mitochondrial carrier YFR045W

1

0

High-throughput

0.458

High

783869

YD183
Uncharacterized protein YDL183C

1

0

High-throughput

0.458

High

783870

TOM22
Mitochondrial import receptor subunit TOM22

1

0

High-throughput

0.458

High

783874

ATP23
Mitochondrial inner membrane protease ATP23

1

0

High-throughput

0.458

High

783875

RM50
Large ribosomal subunit protein bL9m

1

0

High-throughput

0.458

High

783876

YN8O
Uncharacterized protein YNR040W

1

0

High-throughput

0.458

High

783880

RN35
Large ribosomal subunit protein bL35m

1

0

High-throughput

0.458

High

783883

RS15
Small ribosomal subunit protein uS19

1

0

High-throughput

0.458

High

783885

TIM50
Mitochondrial import inner membrane translocase subunit TIM50

1

0

High-throughput

0.458

High

783886

ATP25
ATPase synthesis protein 25, mitochondrial

1

0

High-throughput

0.458

High

783888

DHR1
Probable ATP-dependent RNA helicase DHR1

1

0

High-throughput

0.458

High

783890

RM34
Large ribosomal subunit protein bL34m

1

0

High-throughput

0.458

High

783892

COX20
Cytochrome c oxidase assembly protein COX20, mitochondrial

1

0

High-throughput

0.458

High

783898

MRX9
MIOREX complex component 9

1

0

High-throughput

0.458

High

783901

RDL2
Thiosulfate sulfurtransferase RDL2, mitochondrial

1

0

High-throughput

0.458

High

783902

RS10A
Small ribosomal subunit protein eS10A

1

0

High-throughput

0.458

High

783904

UTP23
rRNA-processing protein UTP23

1

0

High-throughput

0.458

High

783905

MRX4
MIOREX complex component 4

1

0

High-throughput

0.458

High

783849

GBLP
Small ribosomal subunit protein RACK1

1

1

High-throughput

0.437

High

783851

LSM2
LSM complex subunit LSM2

1

1

High-throughput

0.437

High

783867

LSM1
LSM1-LSM7 complex subunit LSM1

1

1

High-throughput

0.437

High

783879

LSM7
LSM complex subunit LSM7

1

1

High-throughput

0.437

High

783866

JJJ2
J protein JJJ2

1

1

High-throughput

0.407

High

783894

ATG17
Autophagy-related protein 17

1

0

High-throughput

0.265

Low

678655

PAT1
Deadenylation-dependent mRNA-decapping factor PAT1

1

0

High-throughput

0.249

Low

682245

SPB4
ATP-dependent rRNA helicase SPB4

1

0

High-throughput

0.249

Low

706827

TF2B
Transcription initiation factor IIB

1

0

High-throughput

0.249

Low

709705

BMH1
Protein BMH1

1

0

High-throughput

0.249

Low

738818

NAB2
Nuclear polyadenylated RNA-binding protein NAB2

1

0

High-throughput

0.249

Low

740878

PUB1
Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

1

0

High-throughput

0.249

Low

783855

LSM4
LSM complex subunit LSM4

1

0

High-throughput

0.249

Low

783857

LSM5
LSM complex subunit LSM5

1

0

High-throughput

0.249

Low

783862

SGN1
RNA-binding protein SGN1

1

0

High-throughput

0.249

Low

783868

HLJ1
Protein HLJ1

1

0

High-throughput

0.249

Low

783881

ORC1
Origin recognition complex subunit 1

1

0

High-throughput

0.249

Low

783887

SCC2
Sister chromatid cohesion protein 2

1

0

High-throughput

0.249

Low

783889

PDS5
Sister chromatid cohesion protein PDS5

1

0

High-throughput

0.249

Low

783899

VAM6
Vacuolar morphogenesis protein 6

1

0

High-throughput

0.249

Low

783903

APC9
Anaphase-promoting complex subunit 9

1

0

High-throughput

0.238

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025