Protein: RM09
Large ribosomal subunit protein uL3m (54S ribosomal protein L9, mitochondrial) (YmL9)

Gene: RM09, MRPL9
Organism: Saccharomyces cerevisiae S288C
Interactions: 115
UniProt ID: P31334

Gene Ontology (top 5):
GO:0003735 - structural constituent of ribosome
GO:0005739 - mitochondrion
GO:0005743 - mitochondrial inner membrane
GO:0005762 - mitochondrial large ribosomal subunit
GO:0032543 - mitochondrial translation

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

678150

IMG1
Large ribosomal subunit protein bL19m

3

0

High-throughput

0.811

High

725763

RM23
Large ribosomal subunit protein uL13m

2

6

High-throughput

0.789

High

725710

RM24
Large ribosomal subunit protein bL28m

4

0

High-throughput

0.664

High

554567

RM02
Large ribosomal subunit protein bL27m

3

2

High-throughput

0.662

High

647888

RM08
Large ribosomal subunit protein bL17m

3

2

High-throughput

0.662

High

725689

RM41
Large ribosomal subunit protein uL23m

3

2

High-throughput

0.662

High

725705

RM04
Large ribosomal subunit protein uL29m

3

1

High-throughput

0.662

High

725706

RM07
Large ribosomal subunit protein uL5m

3

3

High-throughput

0.662

High

725734

RL4P
Large ribosomal subunit protein uL4m

3

3

High-throughput

0.662

High

725748

RM01
Large ribosomal subunit protein uL1m

3

5

High-throughput

0.662

High

725754

MHR1
Large ribosomal subunit protein mL67

3

1

High-throughput

0.662

High

725755

RM35
Large ribosomal subunit protein mL38

3

1

High-throughput

0.662

High

657418

RM25
Large ribosomal subunit protein mL59

4

0

High-throughput

0.654

High

725737

MRH4
ATP-dependent RNA helicase MRH4, mitochondrial

3

4

Small-scale

0.643

High

647957

RM20
Large ribosomal subunit protein mL58

3

0

High-throughput

0.634

High

678568

IMG2
Large ribosomal subunit protein mL49

3

0

High-throughput

0.634

High

725690

RM49
Large ribosomal subunit protein mL61

3

0

High-throughput

0.634

High

725712

RM28
Large ribosomal subunit protein mL40

3

0

High-throughput

0.634

High

725714

RM36
Large ribosomal subunit protein bL31m

3

0

High-throughput

0.634

High

725716

RM39
Large ribosomal subunit protein bL33m

3

0

High-throughput

0.634

High

725745

RM13
Large ribosomal subunit protein mL50

3

0

High-throughput

0.634

High

725702

RM38
Large ribosomal subunit protein uL14m

1

2

High-throughput

0.618

High

725747

RM34
Large ribosomal subunit protein bL34m

3

0

High-throughput

0.616

High

725697

RM06
Large ribosomal subunit protein uL6m

2

3

High-throughput

0.611

High

725713

RM17
Large ribosomal subunit protein mL46

2

2

High-throughput

0.611

High

725718

RM16
Large ribosomal subunit protein uL16m

2

1

High-throughput

0.611

High

154280

RTC6
Large ribosomal subunit protein bL36m

2

0

High-throughput

0.595

High

627082

RM44
Large ribosomal subunit protein mL53

2

0

High-throughput

0.595

High

725735

PRP43
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

2

2

High-throughput

0.588

High

725709

RM15
Large ribosomal subunit protein mL57

2

0

High-throughput

0.585

High

725746

ATP25
ATPase synthesis protein 25, mitochondrial

2

0

High-throughput

0.585

High

725707

RM10
Large ribosomal subunit protein uL15m

2

0

High-throughput

0.576

High

678077

SYP1
Suppressor of yeast profilin deletion

2

1

High-throughput

0.567

High

725733

ROM2
RHO1 GDP-GTP exchange protein 2

2

1

High-throughput

0.567

High

725719

TAF5
SAGA complex/transcription factor TFIID complex subunit TAF5

2

6

High-throughput

0.537

High

725723

NUG1
Nuclear GTP-binding protein NUG1

2

6

High-throughput

0.537

High

725693

PUB1
Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

2

2

High-throughput

0.533

High

645323

XRN1
5'-3' exoribonuclease 1

2

2

High-throughput

0.521

High

725756

IRC3
Putative ATP-dependent helicase IRC3

1

6

High-throughput

0.515

High

725727

SSB2
Ribosome-associated molecular chaperone SSB2

2

5

High-throughput

0.504

High

433506

RL26A
Large ribosomal subunit protein uL24A

1

4

High-throughput

0.479

High

434905

RS3
Small ribosomal subunit protein uS3

1

3

High-throughput

0.479

High

441763

RS14A
Small ribosomal subunit protein uS11A

1

3

High-throughput

0.479

High

454929

RS19A
Small ribosomal subunit protein eS19A

1

2

High-throughput

0.479

High

510276

HSP77
Import motor subunit, mitochondrial

1

4

High-throughput

0.479

High

512877

RS8A
Small ribosomal subunit protein eS8A

1

3

High-throughput

0.479

High

584197

MS116
ATP-dependent RNA helicase MSS116, mitochondrial

1

8

High-throughput

0.479

High

594903

ODPA
Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial

1

1

High-throughput

0.479

High

670177

MRM1
rRNA methyltransferase 1, mitochondrial

1

4

High-throughput

0.479

High

725695

RML2
Large ribosomal subunit protein uL2m

1

5

High-throughput

0.479

High

725696

TIM23
Mitochondrial import inner membrane translocase subunit TIM23

1

1

High-throughput

0.479

High

725698

RSSA1
Small ribosomal subunit protein uS2A

1

1

High-throughput

0.479

High

725700

HSP78
Heat shock protein 78, mitochondrial

1

4

High-throughput

0.479

High

725703

RS27A
Small ribosomal subunit protein eS27A

1

1

High-throughput

0.479

High

725728

MAM33
Mitochondrial acidic protein MAM33

1

2

Small-scale

0.479

High

725736

MNP1
Large ribosomal subunit protein bL12m

1

1

High-throughput

0.479

High

725740

RM19
Large ribosomal subunit protein uL11m

1

1

High-throughput

0.479

High

725741

RM22
Large ribosomal subunit protein uL22m

1

2

High-throughput

0.479

High

725750

RM51
Large ribosomal subunit protein mL43

1

1

High-throughput

0.479

High

725753

YLH47
LETM1 domain-containing protein YLH47, mitochondrial

1

1

Small-scale

0.479

High

725758

MDM38
Mitochondrial distribution and morphology protein 38

1

1

Small-scale

0.479

High

725759

RS10A
Small ribosomal subunit protein eS10A

1

2

High-throughput

0.479

High

725762

UTP23
rRNA-processing protein UTP23

1

2

High-throughput

0.479

High

382854

RMAR
Small ribosomal subunit protein uS3m

1

0

High-throughput

0.458

High

569469

RM31
Large ribosomal subunit protein mL60

1

0

High-throughput

0.458

High

628129

RM33
Large ribosomal subunit protein uL30m

1

0

High-throughput

0.458

High

672516

RM32
Large ribosomal subunit protein bL32m

1

0

High-throughput

0.458

High

725691

ODPB
Pyruvate dehydrogenase E1 component subunit beta, mitochondrial

1

0

High-throughput

0.458

High

725704

RM03
Large ribosomal subunit protein mL44

1

0

High-throughput

0.458

High

725708

RM11
Large ribosomal subunit protein uL10m

1

0

High-throughput

0.458

High

725711

RM27
Large ribosomal subunit protein mL41

1

0

High-throughput

0.458

High

725715

RM37
Large ribosomal subunit protein mL54

1

0

High-throughput

0.458

High

725717

RM40
Large ribosomal subunit protein uL24m

1

0

High-throughput

0.458

High

725724

MRX1
MIOREX complex component 1

1

0

High-throughput

0.458

High

725730

RN49
Large ribosomal subunit protein bL21m

1

0

High-throughput

0.458

High

725739

RM50
Large ribosomal subunit protein bL9m

1

0

High-throughput

0.458

High

725743

RN35
Large ribosomal subunit protein bL35m

1

0

High-throughput

0.458

High

509438

UBI4P
Polyubiquitin [Cleaved into: Ubiquitin]

1

7

High-throughput

0.457

High

642345

MCK1
Protein kinase MCK1

1

1

High-throughput

0.457

High

645888

DBF2
Cell cycle protein kinase DBF2

1

3

High-throughput

0.457

High

725721

RCK1
Serine/threonine-protein kinase RCK1

1

1

High-throughput

0.457

High

394328

EF1A
Elongation factor 1-alpha

1

2

High-throughput

0.445

High

526127

HSP72
Heat shock protein SSA2

1

3

High-throughput

0.445

High

725722

HSP7E
Heat shock protein SSC3, mitochondrial

1

4

High-throughput

0.445

High

403401

PABP
Polyadenylate-binding protein, cytoplasmic and nuclear

1

2

High-throughput

0.437

High

517944

SSBP1
Single-stranded nucleic acid-binding protein

1

3

High-throughput

0.437

High

678634

PAT1
Deadenylation-dependent mRNA-decapping factor PAT1

1

1

High-throughput

0.437

High

682195

SPB4
ATP-dependent rRNA helicase SPB4

1

8

High-throughput

0.437

High

725692

NAB2
Nuclear polyadenylated RNA-binding protein NAB2

1

1

High-throughput

0.437

High

725699

CBF5
H/ACA ribonucleoprotein complex subunit CBF5

1

2

High-throughput

0.437

High

725720

LSM2
LSM complex subunit LSM2

1

1

High-throughput

0.437

High

725729

DSN1
Kinetochore-associated protein DSN1

1

1

High-throughput

0.437

High

725731

LSM1
LSM1-LSM7 complex subunit LSM1

1

3

High-throughput

0.437

High

725742

LSM7
LSM complex subunit LSM7

1

3

High-throughput

0.437

High

725744

LSM3
LSM complex subunit LSM3

1

4

High-throughput

0.437

High

725757

VAM6
Vacuolar morphogenesis protein 6

1

1

High-throughput

0.437

High

725760

YRA1
RNA annealing protein YRA1

1

5

High-throughput

0.437

High

481521

HSP73
Heat shock protein SSA3

1

3

High-throughput

0.407

High

544095

SSB1
Ribosome-associated molecular chaperone SSB1

1

5

High-throughput

0.407

High

676702

GBP2
Serine/arginine

1

2

High-throughput

0.407

High

725688

EF2
Elongation factor 2

1

3

High-throughput

0.407

High

725694

HSP7F
Heat shock protein homolog SSE1

1

5

High-throughput

0.407

High

725732

IMDH3
Inosine-5'-monophosphate dehydrogenase 3

1

2

High-throughput

0.407

High

725749

RRP5
rRNA biogenesis protein RRP5

1

2

High-throughput

0.407

High

725761

HSP42
Heat shock protein 42

1

1

High-throughput

0.407

High

676789

BUD3
Bud site selection protein 3

2

0

High-throughput

0.324

High

725701

UTP20
U3 small nucleolar RNA-associated protein 20

2

0

High-throughput

0.324

High

725751

ATG26
Sterol 3-beta-glucosyltransferase

2

0

High-throughput

0.324

High

725687

MED16
Mediator of RNA polymerase II transcription subunit 16

2

0

High-throughput

0.307

High

603022

EST1
Telomere elongation protein EST1

1

0

High-throughput

0.249

Low

725725

LSM4
LSM complex subunit LSM4

1

0

High-throughput

0.249

Low

725726

LSM5
LSM complex subunit LSM5

1

0

High-throughput

0.249

Low

725738

YGC4
Putative uncharacterized protein YGL024W

1

0

High-throughput

0.249

Low

725752

LSM6
LSM complex subunit LSM6

1

0

High-throughput

0.249

Low

725764

HAA1
Transcriptional activator HAA1

1

0

High-throughput

0.249

Low


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Last updated: 11Aug2025