Protein: ZCHC9
Zinc finger CCHC domain-containing protein 9

Gene: ZCHC9, ZCCHC9
Organism: Homo sapiens
Interactions: 79
UniProt ID: Q8N567

Gene Ontology (top 5):
GO:0003723 - RNA binding
GO:0005654 - nucleoplasm
GO:0005730 - nucleolus
GO:0008270 - zinc ion binding

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1327397

YBOX2
Y-box-binding protein 2

2

18

High-throughput

0.776

High

1327385

LN28A
Protein lin-28 homolog A

2

18

High-throughput

0.712

High

994656

YBOX1
Y-box-binding protein 1

1

18

High-throughput

0.691

High

1149668

SURF2
Surfeit locus protein 2

3

1

High-throughput

0.667

High

1313094

ZC3H3
Zinc finger CCCH domain-containing protein 3

3

6

High-throughput

0.667

High

1327381

MK67I
MKI67 FHA domain-interacting nucleolar phosphoprotein

3

20

High-throughput

0.667

High

1327380

MAK16
Protein MAK16 homolog

2

2

High-throughput

0.628

High

959860

RS3A
Small ribosomal subunit protein eS1

2

8

High-throughput

0.601

High

1112084

KRR1
KRR1 small subunit processome component homolog

2

5

High-throughput

0.601

High

1327373

ZN689
Zinc finger protein 689

2

7

High-throughput

0.601

High

1327382

REXO4
RNA exonuclease 4

2

4

High-throughput

0.601

High

1327396

ABT1
Activator of basal transcription 1

2

4

High-throughput

0.601

High

396504

ESR1
Estrogen receptor

2

6

High-throughput

0.571

High

191707

MAGB2
Melanoma-associated antigen B2

2

2

High-throughput

0.549

High

290631

SURF6
Surfeit locus protein 6

1

4

High-throughput

0.536

High

521809

H14
Histone H1.4

1

20

High-throughput

0.536

High

591732

H2AX
Histone H2AX

1

12

High-throughput

0.536

High

615866

RL17
Large ribosomal subunit protein uL22

1

6

High-throughput

0.536

High

969974

RS16
Small ribosomal subunit protein uS9

1

7

High-throughput

0.536

High

979060

RS6
Small ribosomal subunit protein eS6

1

7

High-throughput

0.536

High

982734

RS24
Small ribosomal subunit protein eS24

1

2

High-throughput

0.536

High

1016515

SRSF3
Serine/arginine-rich splicing factor 3

1

20

High-throughput

0.536

High

1037267

H11
Histone H1.1

1

20

High-throughput

0.536

High

1068261

AHNK
Neuroblast differentiation-associated protein AHNAK

1

3

High-throughput

0.536

High

1226630

E4F1
Transcription factor E4F1

1

5

High-throughput

0.536

High

1327377

UTP23
rRNA-processing protein UTP23 homolog

1

3

High-throughput

0.536

High

1327378

ZNF2
Zinc finger protein 2

1

5

High-throughput

0.536

High

1327383

RBM38
RNA-binding protein 38

1

20

High-throughput

0.536

High

1327390

F120A
Constitutive coactivator of PPAR-gamma-like protein 1

1

2

High-throughput

0.536

High

1327391

NOP53
Ribosome biogenesis protein NOP53

1

5

High-throughput

0.536

High

1327392

DAXX
Death domain-associated protein 6

1

1

High-throughput

0.536

High

1327393

ZBT47
Zinc finger and BTB domain-containing protein 47

1

8

High-throughput

0.536

High

1327399

RBM19
Probable RNA-binding protein 19

1

20

High-throughput

0.536

High

967853

PP1A
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit

1

3

Small-scale

0.501

High

463158

YES
Tyrosine-protein kinase Yes

1

1

High-throughput

0.489

High

649364

H1T
Histone H1t

1

20

High-throughput

0.489

High

690301

STOM
Stomatin

1

1

High-throughput

0.489

High

1124858

FLOT2
Flotillin-2

1

1

High-throughput

0.489

High

1308638

AHNK2
Protein AHNAK2

1

2

High-throughput

0.489

High

1327374

PABP5
Polyadenylate-binding protein 5

1

15

High-throughput

0.489

High

1327379

DHRS6
Dehydrogenase/reductase SDR family member 6

1

1

High-throughput

0.489

High

96719

E9PAV9
G patch domain-containing protein 4

1

1

High-throughput

0.479

High

372572

MYC
Myc proto-oncogene protein

1

7

High-throughput

0.479

High

406386

MYCN
N-myc proto-oncogene protein

1

7

High-throughput

0.479

High

596231

H12
Histone H1.2

1

20

High-throughput

0.479

High

872529

SOX2
Transcription factor SOX-2

1

4

High-throughput

0.479

High

960170

RL26
Large ribosomal subunit protein uL24

1

13

High-throughput

0.479

High

998541

H31
Histone H3.1

1

5

High-throughput

0.479

High

1113685

CUL3
Cullin-3

1

5

High-throughput

0.479

High

1215708

RC3H1
Roquin-1

1

5

High-throughput

0.479

High

1327371

ESR2
Estrogen receptor beta

1

6

High-throughput

0.479

High

1327387

RC3H2
Roquin-2

1

7

High-throughput

0.479

High

1327389

SLX9
Ribosome biogenesis protein SLX9 homolog

1

1

Small-scale

0.479

High

1327394

ZRAN1
Ubiquitin thioesterase ZRANB1

1

4

High-throughput

0.479

High

1327368

FA98A
Protein FAM98A

1

0

High-throughput

0.460

High

1327372

NEP1
Ribosomal RNA small subunit methyltransferase NEP1

1

0

High-throughput

0.460

High

967495

RS7
Small ribosomal subunit protein eS7

1

6

High-throughput

0.445

High

1006546

SRPK2
SRSF protein kinase 2

1

11

High-throughput

0.445

High

1009249

PRR3
Proline-rich protein 3

1

2

High-throughput

0.445

High

1212345

GPTC4
G patch domain-containing protein 4

1

1

High-throughput

0.445

High

1327386

EAF6
Chromatin modification-related protein MEAF6

1

2

High-throughput

0.445

High

506168

UBFL1
Upstream-binding factor 1-like protein 1

1

3

High-throughput

0.439

High

1327395

HECD1
E3 ubiquitin-protein ligase HECTD1

1

5

High-throughput

0.437

High

1315227

CA174
UPF0688 protein C1orf174

1

0

High-throughput

0.426

High

1327376

PYM1
Partner of Y14 and mago

1

0

High-throughput

0.426

High

1241008

L2GL2
LLGL scribble cell polarity complex component 2

1

3

High-throughput

0.407

High

1273893

BHA15
Class A basic helix-loop-helix protein 15

2

0

High-throughput

0.313

High

1309663

ARHGJ
Rho guanine nucleotide exchange factor 19

2

0

High-throughput

0.298

High

1327398

3BP1
SH3 domain-binding protein 1

2

0

High-throughput

0.298

High

954972

S10AA
Protein S100-A10

1

0

High-throughput

0.279

Low

1127428

FGFP1
Fibroblast growth factor-binding protein 1

1

0

High-throughput

0.279

Low

1199920

P5CR3
Pyrroline-5-carboxylate reductase 3

1

0

High-throughput

0.279

Low

1220938

FBX31
F-box only protein 31

1

0

High-throughput

0.279

Low

1260372

H1FNT
Testis-specific H1 histone

1

0

High-throughput

0.279

Low

1327369

OR1M1
Olfactory receptor 1M1

1

0

High-throughput

0.279

Low

1327370

RASF8
Ras association domain-containing protein 8

1

0

High-throughput

0.279

Low

1327375

MMAB
Corrinoid adenosyltransferase MMAB

1

0

High-throughput

0.279

Low

1327384

TPK1
Thiamine pyrophosphokinase 1

1

0

High-throughput

0.279

Low

1327388

COXM2
COX assembly mitochondrial protein 2 homolog

1

0

High-throughput

0.279

Low


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Last updated: 11Aug2025