Protein: VPS39
Vam6/Vps39-like protein (TRAP1-like protein) (hVam6p)

Gene: VPS39
Organism: Homo sapiens
Interactions: 57
UniProt ID: Q96JC1

Gene Ontology (top 5):
GO:0005737 - cytoplasm
GO:0005765 - lysosomal membrane
GO:0005770 - late endosome
GO:0006886 - intracellular protein transport
GO:0006914 - autophagy

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1394867

VPS11
Vacuolar protein sorting-associated protein 11 homolog

10

16

Small-scale

0.756

High

1394861

VPS39
Vam6/Vps39-like protein

1

15

Small-scale

0.713

High

901490

RAB7A
Ras-related protein Rab-7a

2

20

Small-scale

0.619

High

943113

STX17
Syntaxin-17

2

4

Small-scale

0.612

High

1394874

PKHM1
Pleckstrin homology domain-containing family M member 1

2

4

Small-scale

0.611

High

1394865

EPN3
Epsin-3

3

2

High-throughput

0.609

High

1394871

TFP11
Tuftelin-interacting protein 11

2

1

High-throughput

0.606

High

827893

STAT3
Signal transducer and activator of transcription 3

2

1

High-throughput

0.594

High

1394870

UVRAG
UV radiation resistance-associated gene protein

2

3

Small-scale

0.584

High

171916

ZN263
Zinc finger protein 263

2

2

High-throughput

0.574

High

280777

PR40A
Pre-mRNA-processing factor 40 homolog A

1

6

High-throughput

0.536

High

575761

IL1R1
Interleukin-1 receptor type 1

1

5

High-throughput

0.536

High

854228

KI67
Proliferation marker protein Ki-67

1

5

High-throughput

0.536

High

857534

NOTC1
Neurogenic locus notch homolog protein 1

1

2

High-throughput

0.536

High

889175

RBM25
RNA-binding protein 25

1

12

High-throughput

0.536

High

1216391

FAXC
Failed axon connections homolog

1

2

High-throughput

0.536

High

1325621

TXND3
Thioredoxin domain-containing protein 3

1

1

High-throughput

0.536

High

1330208

ZN655
Zinc finger protein 655

1

1

High-throughput

0.536

High

1384105

ARRD3
Arrestin domain-containing protein 3

1

3

High-throughput

0.536

High

1394863

KS6C1
Ribosomal protein S6 kinase delta-1

1

8

High-throughput

0.536

High

1394869

VPS18
Vacuolar protein sorting-associated protein 18 homolog

1

16

Small-scale

0.536

High

1394862

RILP
Rab-interacting lysosomal protein

1

3

Small-scale

0.527

High

888806

VPS41
Vacuolar protein sorting-associated protein 41 homolog

1

17

Small-scale

0.515

High

1087244

STX4
Syntaxin-4

1

16

Small-scale

0.515

High

1124127

NPAT
Protein NPAT

1

0

High-throughput

0.513

High

1394868

GDF3
Growth/differentiation factor 3

1

0

High-throughput

0.513

High

686853

S10A4
Protein S100-A4

1

3

High-throughput

0.489

High

1242489

NFRKB
Nuclear factor related to kappa-B-binding protein

1

3

High-throughput

0.489

High

158869

AP3D1
AP-3 complex subunit delta-1

1

10

Small-scale

0.479

High

412442

NTRK1
High affinity nerve growth factor receptor

1

15

High-throughput

0.479

High

667985

CDK2
Cyclin-dependent kinase 2

1

2

High-throughput

0.479

High

1255085

TRI67
Tripartite motif-containing protein 67

1

10

High-throughput

0.479

High

1257751

VP13C
Intermembrane lipid transfer protein VPS13C

1

1

Small-scale

0.479

High

1383646

VP33A
Vacuolar protein sorting-associated protein 33A

1

18

Small-scale

0.479

High

1394866

VPS16
Vacuolar protein sorting-associated protein 16 homolog

1

11

Small-scale

0.479

High

1394872

HOOK1
Protein Hook homolog 1

1

18

Small-scale

0.479

High

1365443

TBCD5
TBC1 domain family member 5

1

0

Small-scale

0.458

High

1056906

FMR1
Fragile X messenger ribonucleoprotein 1

1

6

High-throughput

0.457

High

62578

S35F4
Solute carrier family 35 member F4

1

2

High-throughput

0.445

High

942825

BCAR1
Breast cancer anti-estrogen resistance protein 1

1

6

High-throughput

0.445

High

1040894

MECOM
Histone-lysine N-methyltransferase MECOM

1

4

High-throughput

0.439

High

1111196

SNW1
SNW domain-containing protein 1

1

1

Small-scale

0.439

High

589422

RFA2
Replication protein A 32 kDa subunit

1

3

High-throughput

0.437

High

915158

CAZA1
F-actin-capping protein subunit alpha-1

1

2

High-throughput

0.437

High

1322282

SPG16
Sperm-associated antigen 16 protein

1

6

High-throughput

0.437

High

1329812

SIR6
NAD-dependent protein deacylase sirtuin-6

1

1

High-throughput

0.437

High

1365490

EDEM1
ER degradation-enhancing alpha-mannosidase-like protein 1

1

1

High-throughput

0.437

High

1383389

ZUP1
Zinc finger-containing ubiquitin peptidase 1

1

3

High-throughput

0.437

High

1394873

TRRAP
Transformation/transcription domain-associated protein

1

5

High-throughput

0.437

High

1292279

S2611
Sodium-independent sulfate anion transporter

1

0

High-throughput

0.426

High

1394864

NDEL1
Nuclear distribution protein nudE-like 1

1

11

High-throughput

0.417

High

1258169

UBP54
Ubiquitin carboxyl-terminal hydrolase 54

2

0

High-throughput

0.328

High

1029909

RUNX1
Runt-related transcription factor 1

1

0

High-throughput

0.282

High

1219195

SPAT1
Spermatogenesis-associated protein 1

1

0

High-throughput

0.279

Low

1326727

MIA40
Mitochondrial intermembrane space import and assembly protein 40

1

0

High-throughput

0.279

Low

1392323

BORC6
BLOC-1-related complex subunit 6

1

0

Small-scale

0.269

Low


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Last updated: 11Aug2025