Protein: YFIF
Uncharacterized tRNA/rRNA methyltransferase YfiF (EC 2.1.1.-)

Gene: YFIF
Organism: Escherichia coli K-12
Interactions: 93
UniProt ID: P0AGJ5

Gene Ontology (top 5):
GO:0003723 - RNA binding
GO:0005829 - cytosol
GO:0006396 - RNA processing
GO:0008173 - RNA methyltransferase activity
GO:0032259 - methylation

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

469663

RL2
Large ribosomal subunit protein uL2

3

4

High-throughput

0.657

High

461359

RS11
Small ribosomal subunit protein uS11

3

1

High-throughput

0.643

High

460881

RL20
Large ribosomal subunit protein bL20

2

1

High-throughput

0.588

High

461208

RL9
Large ribosomal subunit protein bL9

2

2

High-throughput

0.588

High

461383

RS12
Small ribosomal subunit protein uS12

2

1

High-throughput

0.588

High

461588

RS18
Small ribosomal subunit protein bS18

2

2

High-throughput

0.588

High

462846

SSRP
SsrA-binding protein

2

1

High-throughput

0.588

High

464310

CSPD
Cold shock-like protein CspD

2

2

High-throughput

0.588

High

467109

DBHA
DNA-binding protein HU-alpha

2

1

High-throughput

0.588

High

469646

RL18
Large ribosomal subunit protein uL18

2

3

High-throughput

0.588

High

469651

RNE
Ribonuclease E

2

1

High-throughput

0.588

High

469668

RS21
Small ribosomal subunit protein bS21

2

1

High-throughput

0.588

High

469207

RL17
Large ribosomal subunit protein bL17

2

0

High-throughput

0.585

High

469567

SSB
Single-stranded DNA-binding protein

2

2

High-throughput

0.571

High

459548

IF3
Translation initiation factor IF-3 [Cleaved into: Translation initiation factor IF-3, N-terminally processed; Translation initiation factor IF-3S]

2

0

High-throughput

0.563

High

461443

RS13
Small ribosomal subunit protein uS13

2

0

High-throughput

0.563

High

461623

RS19
Small ribosomal subunit protein uS19

2

0

High-throughput

0.563

High

461679

RS20
Small ribosomal subunit protein bS20

2

0

High-throughput

0.563

High

462427

RS8
Small ribosomal subunit protein uS8

2

0

High-throughput

0.563

High

462620

RNPA
Ribonuclease P protein component

2

0

High-throughput

0.563

High

467780

YIBL
Uncharacterized protein YibL

2

0

High-throughput

0.563

High

468018

RS15
Small ribosomal subunit protein uS15

2

0

High-throughput

0.563

High

469645

YHBY
RNA-binding protein YhbY

2

0

High-throughput

0.563

High

469652

LPXD
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase

2

0

High-throughput

0.563

High

469661

HRPA
ATP-dependent RNA helicase HrpA

2

0

High-throughput

0.563

High

469675

SUFC
Probable ATP-dependent transporter SufC

2

0

High-throughput

0.563

High

463411

UVRC
UvrABC system protein C

2

1

High-throughput

0.549

High

462153

RS4
Small ribosomal subunit protein uS4

2

0

High-throughput

0.545

High

461537

RS16
Small ribosomal subunit protein bS16

2

1

High-throughput

0.537

High

469654

HOLB
DNA polymerase III subunit delta'

2

1

High-throughput

0.537

High

458979

IHFA
Integration host factor subunit alpha

1

1

High-throughput

0.536

High

469655

GREB
Transcription elongation factor GreB

1

1

High-throughput

0.489

High

357073

RS7
Small ribosomal subunit protein uS7

1

3

High-throughput

0.484

High

458308

CLPP
ATP-dependent Clp protease proteolytic subunit

1

2

High-throughput

0.484

High

458866

GREA
Transcription elongation factor GreA

1

1

High-throughput

0.484

High

460788

RL1
Large ribosomal subunit protein uL1

1

3

High-throughput

0.484

High

462338

RS5
Small ribosomal subunit protein uS5

1

2

High-throughput

0.484

High

465462

CSPC
Cold shock-like protein CspC

1

2

High-throughput

0.484

High

465675

RLUC
Ribosomal large subunit pseudouridine synthase C

1

2

High-throughput

0.484

High

469323

RL6
Large ribosomal subunit protein uL6

1

1

High-throughput

0.484

High

469647

SELB
Selenocysteine-specific elongation factor

1

2

High-throughput

0.484

High

469660

RLUB
Ribosomal large subunit pseudouridine synthase B

1

2

High-throughput

0.484

High

469664

RL3
Large ribosomal subunit protein uL3

1

3

High-throughput

0.484

High

469666

RL22
Large ribosomal subunit protein uL22

1

2

High-throughput

0.484

High

469662

YHHX
Uncharacterized oxidoreductase YhhX

1

0

High-throughput

0.479

High

469667

YQJI
Transcriptional regulator YqjI

1

0

High-throughput

0.479

High

429399

FDHF
Formate dehydrogenase H

1

1

High-throughput

0.479

High

460661

RL19
Large ribosomal subunit protein bL19

1

2

High-throughput

0.479

High

460989

RL28
Large ribosomal subunit protein bL28

1

1

High-throughput

0.479

High

461298

RS10
Small ribosomal subunit protein uS10

1

1

High-throughput

0.479

High

462499

RS9
Small ribosomal subunit protein uS9

1

3

High-throughput

0.479

High

469665

RL4
Large ribosomal subunit protein uL4

1

2

High-throughput

0.479

High

356951

RS6
Small ribosomal subunit protein bS6

1

0

High-throughput

0.464

High

368612

DPO3E
DNA polymerase III subunit epsilon

1

0

High-throughput

0.464

High

458937

HFQ
RNA-binding protein Hfq

1

0

High-throughput

0.464

High

459597

KDSA
2-dehydro-3-deoxyphosphooctonate aldolase

1

0

High-throughput

0.464

High

460290

PYRH
Uridylate kinase

1

0

High-throughput

0.464

High

461969

RS3
Small ribosomal subunit protein uS3

1

0

High-throughput

0.464

High

462939

TGT
Queuine tRNA-ribosyltransferase

1

0

High-throughput

0.464

High

464775

PHOL
PhoH-like protein

1

0

High-throughput

0.464

High

465149

DEAD
ATP-dependent RNA helicase DeaD

1

0

High-throughput

0.464

High

466038

YBCJ
Putative RNA-binding protein YbcJ

1

0

High-throughput

0.464

High

466388

FTSA
Cell division protein FtsA

1

0

High-throughput

0.464

High

466604

HOLE
DNA polymerase III subunit theta

1

0

High-throughput

0.464

High

469650

RNR
Ribonuclease R

1

0

High-throughput

0.464

High

469653

PSS
CDP-diacylglycerol--serine O-phosphatidyltransferase

1

0

High-throughput

0.464

High

469657

RLMN
Dual-specificity RNA methyltransferase RlmN

1

0

High-throughput

0.464

High

469672

RLMKL
Ribosomal RNA large subunit methyltransferase K/L [Includes: 23S rRNA m2G2445 methyltransferase

1

0

High-throughput

0.464

High

463623

YEEX
UPF0265 protein YeeX

1

0

High-throughput

0.458

High

464025

YFBU
UPF0304 protein YfbU

1

0

High-throughput

0.458

High

466353

PCNB
Poly(A) polymerase I

1

0

High-throughput

0.458

High

468689

RRAB
Regulator of ribonuclease activity B

1

0

High-throughput

0.458

High

469275

RL21
Large ribosomal subunit protein bL21

1

0

High-throughput

0.458

High

469659

RLMJ
Ribosomal RNA large subunit methyltransferase J

1

0

High-throughput

0.458

High

469669

CSRA
Carbon storage regulator

1

0

High-throughput

0.458

High

469676

MENI
1,4-dihydroxy-2-naphthoyl-CoA hydrolase

1

0

High-throughput

0.458

High

469367

RS14
Small ribosomal subunit protein uS14

1

1

High-throughput

0.442

High

469674

A2MG
Alpha-2-macroglobulin

1

2

High-throughput

0.442

High

459684

KPRS
Ribose-phosphate pyrophosphokinase

1

0

High-throughput

0.426

High

463003

TIG
Trigger factor

1

0

Small-scale

0.426

High

469649

MURG
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase

2

0

High-throughput

0.324

High

467941

RL16
Large ribosomal subunit protein uL16

2

0

High-throughput

0.307

High

468149

DACA
D-alanyl-D-alanine carboxypeptidase DacA

2

0

High-throughput

0.307

High

469656

YEHZ
Glycine betaine-binding protein YehZ

1

0

High-throughput

0.279

Low

469658

HYBD
Hydrogenase 2 maturation protease

1

0

High-throughput

0.279

Low

469670

YBGP
Uncharacterized fimbrial chaperone YbgP

1

0

High-throughput

0.279

Low

416854

DPO3X
DNA polymerase III subunit tau

1

0

High-throughput

0.253

Low

459991

RPPH
RNA pyrophosphohydrolase

1

0

High-throughput

0.253

Low

463488

TRMB
tRNA

1

0

High-throughput

0.253

Low

466590

DNAG
DNA primase

1

0

High-throughput

0.253

Low

469648

SRLR
Glucitol operon repressor

1

0

High-throughput

0.253

Low

469671

YBJX
Uncharacterized protein YbjX

1

0

High-throughput

0.249

Low

469673

YNCE
Uncharacterized protein YncE

1

0

High-throughput

0.249

Low


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Last updated: 15 Jul 2024