Protein: ZNF48
Zinc finger protein 48 (Zinc finger protein 553)

Gene: ZNF48
Organism: Homo sapiens
Interactions: 147
UniProt ID: Q96MX3

Gene Ontology (top 5):
GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006357 - regulation of transcription by RNA polymerase II
GO:0008270 - zinc ion binding
GO:0042802 - identical protein binding

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1186357

ZN792
Zinc finger protein 792

2

4

High-throughput

0.783

High

1239197

ZN774
Zinc finger protein 774

2

9

High-throughput

0.783

High

1398567

ZNF48
Zinc finger protein 48

2

2

High-throughput

0.783

High

600196

ZNF22
Zinc finger protein 22

1

15

High-throughput

0.691

High

943728

PRD15
PR domain zinc finger protein 15

1

3

High-throughput

0.691

High

946055

ZN121
Zinc finger protein 121

1

8

High-throughput

0.691

High

1180350

ZN800
Zinc finger protein 800

1

7

High-throughput

0.691

High

1234780

ZN770
Zinc finger protein 770

1

4

High-throughput

0.691

High

1281445

ZN467
Zinc finger protein 467

1

11

High-throughput

0.691

High

1333138

ZFP62
Zinc finger protein 62 homolog

1

1

High-throughput

0.691

High

1341252

CTCFL
Transcriptional repressor CTCFL

1

9

High-throughput

0.691

High

1398051

ZN512
Zinc finger protein 512

1

11

High-throughput

0.691

High

1398568

ZN714
Zinc finger protein 714

1

5

High-throughput

0.691

High

1398569

ZN317
Zinc finger protein 317

1

2

High-throughput

0.691

High

1398587

PATZ1
POZ-, AT hook-, and zinc finger-containing protein 1

1

10

High-throughput

0.691

High

1398594

ZN629
Zinc finger protein 629

1

2

High-throughput

0.691

High

1398595

ZBT47
Zinc finger and BTB domain-containing protein 47

1

20

High-throughput

0.691

High

1398590

ABC3C
DNA dC->dU-editing enzyme APOBEC-3C

3

2

High-throughput

0.665

High

521870

H14
Histone H1.4

2

9

High-throughput

0.628

High

1037321

H11
Histone H1.1

2

9

High-throughput

0.611

High

1205942

MTUS2
Microtubule-associated tumor suppressor candidate 2

2

9

High-throughput

0.606

High

1357724

TRI41
E3 ubiquitin-protein ligase TRIM41

2

8

High-throughput

0.606

High

1398596

ZN346
Zinc finger protein 346

2

1

High-throughput

0.601

High

281084

TACC1
Transforming acidic coiled-coil-containing protein 1

2

0

High-throughput

0.580

High

949425

EIF3E
Eukaryotic translation initiation factor 3 subunit E

2

0

High-throughput

0.580

High

1061830

TLE5
TLE family member 5

2

0

High-throughput

0.580

High

1148541

SF3B4
Splicing factor 3B subunit 4

2

0

High-throughput

0.580

High

1359888

PRP31
U4/U6 small nuclear ribonucleoprotein Prp31

2

0

High-throughput

0.580

High

208345

RRP8
Ribosomal RNA-processing protein 8

2

2

High-throughput

0.574

High

841430

RBM34
RNA-binding protein 34

2

2

High-throughput

0.574

High

396739

ESR1
Estrogen receptor

2

9

High-throughput

0.571

High

1398576

MK67I
MKI67 FHA domain-interacting nucleolar phosphoprotein

2

2

High-throughput

0.558

High

65136

GG6L9
Golgin subfamily A member 6-like protein 9

2

8

High-throughput

0.553

High

1063540

GOGA2
Golgin subfamily A member 2

2

8

High-throughput

0.553

High

1388837

HOOK2
Protein Hook homolog 2

2

2

High-throughput

0.553

High

191757

MAGB2
Melanoma-associated antigen B2

1

2

High-throughput

0.536

High

257941

DKC1
H/ACA ribonucleoprotein complex subunit DKC1

1

1

High-throughput

0.536

High

287097

PRKRA
Interferon-inducible double-stranded RNA-dependent protein kinase activator A

1

16

High-throughput

0.536

High

290682

SURF6
Surfeit locus protein 6

1

2

High-throughput

0.536

High

428919

RLA0
Large ribosomal subunit protein uL10

1

1

High-throughput

0.536

High

615929

RL17
Large ribosomal subunit protein uL22

1

4

High-throughput

0.536

High

658350

RS3
Small ribosomal subunit protein uS3

1

1

High-throughput

0.536

High

686353

RL13
Large ribosomal subunit protein eL13

1

3

High-throughput

0.536

High

785372

RL4
Large ribosomal subunit protein uL4

1

3

High-throughput

0.536

High

824294

RL13A
Large ribosomal subunit protein uL13

1

3

High-throughput

0.536

High

855179

NOP2
28S rRNA

1

6

High-throughput

0.536

High

860323

RS9
Small ribosomal subunit protein uS4

1

1

High-throughput

0.536

High

960844

RL15
Large ribosomal subunit protein eL15

1

2

High-throughput

0.536

High

961809

RL37A
Large ribosomal subunit protein eL43

1

1

High-throughput

0.536

High

975874

RL7A
Large ribosomal subunit protein eL8

1

3

High-throughput

0.536

High

977054

CNBP
CCHC-type zinc finger nucleic acid binding protein

1

2

High-throughput

0.536

High

978667

RL23A
Large ribosomal subunit protein uL23

1

4

High-throughput

0.536

High

979148

RS6
Small ribosomal subunit protein eS6

1

3

High-throughput

0.536

High

984503

RL30
Large ribosomal subunit protein eL30

1

3

High-throughput

0.536

High

985292

RL10A
Large ribosomal subunit protein uL1

1

4

High-throughput

0.536

High

1008842

RED1
Double-stranded RNA-specific editase 1

1

6

High-throughput

0.536

High

1047703

NOTC2
Neurogenic locus notch homolog protein 2

1

9

High-throughput

0.536

High

1061103

SRSF1
Serine/arginine-rich splicing factor 1

1

7

High-throughput

0.536

High

1062085

SRSF4
Serine/arginine-rich splicing factor 4

1

8

High-throughput

0.536

High

1089811

ILF3
Interleukin enhancer-binding factor 3

1

6

High-throughput

0.536

High

1130819

RRP5
Protein RRP5 homolog

1

1

High-throughput

0.536

High

1137131

SART3
Spliceosome associated factor 3, U4/U6 recycling protein

1

2

High-throughput

0.536

High

1148145

PUM3
Pumilio homolog 3

1

1

High-throughput

0.536

High

1219424

TUT7
Terminal uridylyltransferase 7

1

1

High-throughput

0.536

High

1271507

DHX30
ATP-dependent RNA helicase DHX30

1

1

High-throughput

0.536

High

1351013

DDX54
ATP-dependent RNA helicase DDX54

1

1

High-throughput

0.536

High

1398572

MBB1A
Myb-binding protein 1A

1

1

High-throughput

0.536

High

1398578

REXO4
RNA exonuclease 4

1

4

High-throughput

0.536

High

1398588

SSF1
Suppressor of SWI4 1 homolog

1

3

High-throughput

0.536

High

188520

NVL
Nuclear valosin-containing protein-like

1

0

High-throughput

0.513

High

620529

NUCL
Nucleolin

1

0

High-throughput

0.513

High

859402

RL5
Large ribosomal subunit protein uL18

1

0

High-throughput

0.513

High

961371

RL27
Large ribosomal subunit protein eL27

1

0

High-throughput

0.513

High

969375

RS8
Small ribosomal subunit protein eS8

1

0

High-throughput

0.513

High

1043732

CEBPZ
CCAAT/enhancer-binding protein zeta

1

0

High-throughput

0.513

High

1057860

RL18
Large ribosomal subunit protein eL18

1

0

High-throughput

0.513

High

1146522

TTF1
Transcription termination factor 1

1

0

High-throughput

0.513

High

1150345

TAF1A
TATA box-binding protein-associated factor RNA polymerase I subunit A

1

0

High-throughput

0.513

High

1200516

TAF1B
TATA box-binding protein-associated factor RNA polymerase I subunit B

1

0

High-throughput

0.513

High

1210508

HP1B3
Heterochromatin protein 1-binding protein 3

1

0

High-throughput

0.513

High

1259014

CENPU
Centromere protein U

1

0

High-throughput

0.513

High

1293799

FBX11
F-box only protein 11

1

0

High-throughput

0.513

High

1314680

SRRM1
Serine/arginine repetitive matrix protein 1

1

0

High-throughput

0.513

High

1398577

GTPB4
GTP-binding protein 4

1

0

High-throughput

0.513

High

1398581

TAF1D
TATA box-binding protein-associated factor RNA polymerase I subunit D

1

0

High-throughput

0.513

High

1398584

DDX31
ATP-dependent DNA helicase DDX31

1

0

High-throughput

0.513

High

1398586

NMNA1
Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1

1

0

High-throughput

0.513

High

1398599

NOC2L
Nucleolar complex protein 2 homolog

1

0

High-throughput

0.513

High

301175

RL1D1
Ribosomal L1 domain-containing protein 1

1

4

High-throughput

0.489

High

346208

STAU1
Double-stranded RNA-binding protein Staufen homolog 1

1

16

High-throughput

0.489

High

657289

KALM
Anosmin-1

1

6

High-throughput

0.489

High

859027

RL27A
Large ribosomal subunit protein uL15

1

1

High-throughput

0.489

High

859670

RL21
Large ribosomal subunit protein eL21

1

1

High-throughput

0.489

High

860893

RS10
Small ribosomal subunit protein eS10

1

3

High-throughput

0.489

High

985823

RL11
Large ribosomal subunit protein uL5

1

2

High-throughput

0.489

High

1127462

FGFP1
Fibroblast growth factor-binding protein 1

1

3

High-throughput

0.489

High

1199355

GLE1
mRNA export factor GLE1

1

2

High-throughput

0.489

High

1231650

RL7L
Ribosomal protein uL30-like

1

3

High-throughput

0.489

High

1314210

SPB1
pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3

1

1

High-throughput

0.489

High

1336619

PAPD5
Terminal nucleotidyltransferase 4B

1

1

High-throughput

0.489

High

1351446

BRX1
Ribosome biogenesis protein BRX1 homolog

1

5

High-throughput

0.489

High

1356019

NOC3L
Nucleolar complex protein 3 homolog

1

1

High-throughput

0.489

High

1392212

DDX27
Probable ATP-dependent RNA helicase DDX27

1

1

High-throughput

0.489

High

1398574

GTPB2
GTP-binding protein 2

1

1

High-throughput

0.489

High

1398582

YTDC2
3'-5' RNA helicase YTHDC2

1

1

High-throughput

0.489

High

1398589

DDX21
Nucleolar RNA helicase 2

1

1

High-throughput

0.489

High

1398593

RBM28
RNA-binding protein 28

1

1

High-throughput

0.489

High

1398600

RL36
Large ribosomal subunit protein eL36

1

7

High-throughput

0.489

High

185941

OGT1
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

1

0

High-throughput

0.480

High

372872

MYC
Myc proto-oncogene protein

1

1

High-throughput

0.479

High

406519

MYCN
N-myc proto-oncogene protein

1

1

High-throughput

0.479

High

810298

RL3
Large ribosomal subunit protein uL3

1

4

High-throughput

0.479

High

980162

H4
Histone H4

1

1

High-throughput

0.479

High

1067611

EP300
Histone acetyltransferase p300

1

2

High-throughput

0.479

High

1313348

SMC5
Structural maintenance of chromosomes protein 5

1

2

High-throughput

0.479

High

1367050

ESR2
Estrogen receptor beta

1

9

High-throughput

0.479

High

472994

RU17
U1 small nuclear ribonucleoprotein 70 kDa

1

0

High-throughput

0.458

High

770262

RL22
Large ribosomal subunit protein eL22

1

0

High-throughput

0.458

High

1398585

LN28A
Protein lin-28 homolog A

1

8

High-throughput

0.445

High

1398597

RL26L
Ribosomal protein uL24-like

1

3

High-throughput

0.437

High

1136841

MO4L2
Mortality factor 4-like protein 2

3

0

High-throughput

0.337

High

1118964

BYST
Bystin

2

0

High-throughput

0.316

High

1198501

CEP55
Centrosomal protein of 55 kDa

2

0

High-throughput

0.316

High

1398573

FND11
Fibronectin type III domain-containing protein 11

2

0

High-throughput

0.316

High

1398580

OSBL3
Oxysterol-binding protein-related protein 3

2

0

High-throughput

0.316

High

140623

MPP10
U3 small nucleolar ribonucleoprotein protein MPP10

1

0

High-throughput

0.279

Low

244393

NPA1P
Nucleolar pre-ribosomal-associated protein 1

1

0

High-throughput

0.279

Low

338172

NSA2
Ribosome biogenesis protein NSA2 homolog

1

0

High-throughput

0.279

Low

428484

RLA2
Large ribosomal subunit protein P2

1

0

High-throughput

0.279

Low

985529

RL32
Large ribosomal subunit protein eL32

1

0

High-throughput

0.279

Low

986155

RL8
Large ribosomal subunit protein uL2

1

0

High-throughput

0.279

Low

1037598

RL18A
Large ribosomal subunit protein eL20

1

0

High-throughput

0.279

Low

1121591

URB2
Unhealthy ribosome biogenesis protein 2 homolog

1

0

High-throughput

0.279

Low

1130959

BMS1
Ribosome biogenesis protein BMS1 homolog

1

0

High-throughput

0.279

Low

1139998

RRS1
Ribosome biogenesis regulatory protein homolog

1

0

High-throughput

0.279

Low

1150311

TAF1C
TATA box-binding protein-associated factor RNA polymerase I subunit C

1

0

High-throughput

0.279

Low

1322502

PUSL1
tRNA pseudouridine synthase-like 1

1

0

High-throughput

0.279

Low

1341127

WDR36
WD repeat-containing protein 36

1

0

High-throughput

0.279

Low

1398570

UIF
UAP56-interacting factor

1

0

High-throughput

0.279

Low

1398571

EBP2
Probable rRNA-processing protein EBP2

1

0

High-throughput

0.279

Low

1398575

MAK16
Protein MAK16 homolog

1

0

High-throughput

0.279

Low

1398579

DDX24
ATP-dependent RNA helicase DDX24

1

0

High-throughput

0.279

Low

1398583

RPF2
Ribosome production factor 2 homolog

1

0

High-throughput

0.279

Low

1398591

TXLNG
Gamma-taxilin

1

0

High-throughput

0.279

Low

1398592

SDA1
Protein SDA1 homolog

1

0

High-throughput

0.279

Low

1398598

NIP7
60S ribosome subunit biogenesis protein NIP7 homolog

1

0

High-throughput

0.279

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025