Protein: VATD
V-type proton ATPase subunit D (V-ATPase subunit D) (V-ATPase 28 kDa accessory protein) (Vacuolar proton pump subunit D)

Gene: VATD, ATP6V1D
Organism: Homo sapiens
Interactions: 99
UniProt ID: Q9Y5K8

Gene Ontology (top 5):
GO:0000139 - Golgi membrane
GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain
GO:0005654 - nucleoplasm
GO:0005765 - lysosomal membrane
GO:0005813 - centrosome

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1164286

VATF
V-type proton ATPase subunit F

4

4

High-throughput

0.902

High

800601

VATA
V-type proton ATPase catalytic subunit A

4

8

High-throughput

0.892

High

583124

VATB1
V-type proton ATPase subunit B, kidney isoform

4

4

High-throughput

0.886

High

637082

VATB2
V-type proton ATPase subunit B, brain isoform

4

4

High-throughput

0.881

High

961588

VA0D1
V-type proton ATPase subunit d 1

2

1

High-throughput

0.811

High

784817

VATE1
V-type proton ATPase subunit E 1

4

4

High-throughput

0.686

High

1323382

VPS52
Vacuolar protein sorting-associated protein 52 homolog

3

2

High-throughput

0.675

High

292790

RENR
Renin receptor

4

0

High-throughput

0.670

High

1371998

VPP1
V-type proton ATPase 116 kDa subunit a 1

3

5

High-throughput

0.662

High

1460185

VATH
V-type proton ATPase subunit H

3

2

High-throughput

0.662

High

1491341

VPP2
V-type proton ATPase 116 kDa subunit a 2

3

5

High-throughput

0.662

High

1414756

BBLN
Bublin coiled-coil protein

5

1

High-throughput

0.657

High

1338148

VATC2
V-type proton ATPase subunit C 2

3

3

High-throughput

0.656

High

1429219

UBA5
Ubiquitin-like modifier-activating enzyme 5

3

0

High-throughput

0.634

High

276876

VATG1
V-type proton ATPase subunit G 1

2

3

High-throughput

0.611

High

164144

NDC80
Kinetochore protein NDC80 homolog

2

1

High-throughput

0.606

High

124683

PLM
Phospholemman

2

0

High-throughput

0.602

High

705929

TNR8
Tumor necrosis factor receptor superfamily member 8

2

0

High-throughput

0.602

High

1490954

COG6
Conserved oligomeric Golgi complex subunit 6

2

0

High-throughput

0.602

High

1106822

VPP3
V-type proton ATPase 116 kDa subunit a 3

2

5

High-throughput

0.601

High

1438152

VPP4
V-type proton ATPase 116 kDa subunit a 4

2

5

High-throughput

0.601

High

637120

VATC1
V-type proton ATPase subunit C 1

2

3

High-throughput

0.584

High

1277661

K1C27
Keratin, type I cytoskeletal 27

2

0

High-throughput

0.580

High

1386308

HAUS1
HAUS augmin-like complex subunit 1

2

0

High-throughput

0.580

High

1400212

SYGP1
Ras/Rap GTPase-activating protein SynGAP

2

0

High-throughput

0.576

High

49512

TLDC2
TLD domain-containing protein 2

2

3

High-throughput

0.574

High

341228

VATG2
V-type proton ATPase subunit G 2

2

3

High-throughput

0.571

High

857606

NOTC1
Neurogenic locus notch homolog protein 1

1

1

High-throughput

0.536

High

1110831

PKD2
Polycystin-2

1

1

High-throughput

0.536

High

1226339

CP135
Centrosomal protein of 135 kDa

1

1

High-throughput

0.536

High

1461657

TBC24
TBC1 domain family member 24

1

2

High-throughput

0.536

High

1153759

TOM34
Mitochondrial import receptor subunit TOM34

1

0

Small-scale

0.529

High

245177

AQR
RNA helicase aquarius

1

0

High-throughput

0.513

High

774131

ADDA
Alpha-adducin

1

0

High-throughput

0.513

High

878359

MRP
MARCKS-related protein

1

0

High-throughput

0.513

High

968844

PRS4
26S proteasome regulatory subunit 4

1

0

High-throughput

0.513

High

994434

PP2AA
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform

1

0

High-throughput

0.513

High

1026301

CLH1
Clathrin heavy chain 1

1

0

High-throughput

0.513

High

1120663

DAG1
Dystroglycan 1

1

0

High-throughput

0.513

High

1256369

AN13D
Ankyrin repeat domain-containing protein 13D

1

0

High-throughput

0.513

High

1371391

UBP13
Ubiquitin carboxyl-terminal hydrolase 13

1

0

High-throughput

0.513

High

1371809

UBP7
Ubiquitin carboxyl-terminal hydrolase 7

1

0

High-throughput

0.513

High

1453762

NDUAD
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

1

0

High-throughput

0.513

High

1491222

GOT1B
Vesicle transport protein GOT1B

1

0

High-throughput

0.513

High

1340937

NCOA7
Nuclear receptor coactivator 7

1

3

High-throughput

0.489

High

1063731

GOGA2
Golgin subfamily A member 2

1

3

High-throughput

0.481

High

123005

FZD9
Frizzled-9

1

1

High-throughput

0.479

High

573738

ENPL
Endoplasmin

1

2

High-throughput

0.479

High

946940

H2B1D
Histone H2B type 1-D

1

1

High-throughput

0.479

High

992410

SKP1
S-phase kinase-associated protein 1

1

1

Small-scale

0.479

High

1219794

RRAGB
Ras-related GTP-binding protein B

1

2

Small-scale

0.479

High

1243303

MEAK7
MTOR-associated protein MEAK7

1

4

High-throughput

0.479

High

1326399

NIN
Ninein

1

1

High-throughput

0.479

High

1381840

VATE2
V-type proton ATPase subunit E 2

1

4

High-throughput

0.479

High

1408072

H2B1L
Histone H2B type 1-L

1

1

High-throughput

0.479

High

1434348

PKHA4
Pleckstrin homology domain-containing family A member 4

1

1

High-throughput

0.479

High

219013

TGON2
Trans-Golgi network integral membrane protein 2

1

0

High-throughput

0.458

High

243415

PRKN
E3 ubiquitin-protein ligase parkin

1

0

High-throughput

0.458

High

269640

SRGP2
SLIT-ROBO Rho GTPase-activating protein 2

1

0

High-throughput

0.458

High

377802

INS
Insulin [Cleaved into: Insulin B chain; Insulin A chain]

1

0

High-throughput

0.458

High

446098

ENOA
Alpha-enolase

1

0

High-throughput

0.458

High

522803

NR2F6
Nuclear receptor subfamily 2 group F member 6

1

0

High-throughput

0.458

High

560571

IFM1
Interferon-induced transmembrane protein 1

1

0

High-throughput

0.458

High

651471

CBL
E3 ubiquitin-protein ligase CBL

1

0

High-throughput

0.458

High

902165

RAB9A
Ras-related protein Rab-9A

1

0

High-throughput

0.458

High

931320

AT12A
Potassium-transporting ATPase alpha chain 2

1

0

High-throughput

0.458

High

1091855

TP4A2
Protein tyrosine phosphatase type IVA 2

1

0

Small-scale

0.458

High

1153958

SMAD2
Mothers against decapentaplegic homolog 2

1

0

High-throughput

0.458

High

1280252

MTEF4
Transcription termination factor 4, mitochondrial

1

0

High-throughput

0.458

High

1312908

DRC2
Dynein regulatory complex subunit 2

1

0

High-throughput

0.458

High

1346593

PSMA8
Proteasome subunit alpha-type 8

1

0

High-throughput

0.458

High

1439654

CHM1A
Charged multivesicular body protein 1a

1

0

High-throughput

0.458

High

1446214

EXOS4
Exosome complex component RRP41

1

0

High-throughput

0.458

High

1459686

SWP70
Switch-associated protein 70

1

0

High-throughput

0.458

High

538725

GTR1
Solute carrier family 2, facilitated glucose transporter member 1

1

1

High-throughput

0.445

High

935353

TERA
Transitional endoplasmic reticulum ATPase

1

1

High-throughput

0.445

High

1417647

S46A2
Solute carrier family 46 member 2

1

2

High-throughput

0.445

High

1448600

DISC1
Disrupted in schizophrenia 1 protein

1

0

High-throughput

0.438

High

261344

NSMA
Sphingomyelin phosphodiesterase 2

1

0

High-throughput

0.426

High

337155

NPT2B
Sodium-dependent phosphate transport protein 2B

1

0

High-throughput

0.426

High

373620

MYC
Myc proto-oncogene protein

1

0

High-throughput

0.426

High

530667

TAU
Microtubule-associated protein tau

1

0

High-throughput

0.426

High

609853

LEG3
Galectin-3

1

0

High-throughput

0.426

High

1119407

CAC1C
Voltage-dependent L-type calcium channel subunit alpha-1C

1

0

High-throughput

0.426

High

1238910

MFS12
Major facilitator superfamily domain-containing protein 12

1

0

High-throughput

0.426

High

1288958

RIMS1
Regulating synaptic membrane exocytosis protein 1

1

0

High-throughput

0.426

High

1315498

K2013
Uncharacterized protein KIAA2013

1

0

High-throughput

0.426

High

1325963

MFD4A
Major facilitator superfamily domain-containing protein 4A

1

0

High-throughput

0.426

High

1334296

S38A9
Neutral amino acid transporter 9

1

0

High-throughput

0.426

High

1353742

MOT10
Monocarboxylate transporter 10

1

0

High-throughput

0.426

High

1490603

ITM2B
Integral membrane protein 2B

1

0

High-throughput

0.426

High

1030826

DEF5
Defensin alpha 5

2

0

High-throughput

0.313

High

556972

MYH7
Myosin-7

1

0

High-throughput

0.279

Low

628599

ISK2
Serine protease inhibitor Kazal-type 2

1

0

High-throughput

0.279

Low

1412375

TIM29
Mitochondrial import inner membrane translocase subunit Tim29

1

0

High-throughput

0.279

Low

1491697

T10B
Mitochondrial import inner membrane translocase subunit Tim10 B

1

0

High-throughput

0.279

Low

106927

APRIO
Alternative prion protein

1

0

High-throughput

0.249

Low

1256274

TRI67
Tripartite motif-containing protein 67

1

0

High-throughput

0.249

Low

1460336

XPO7
Exportin-7

1

0

High-throughput

0.249

Low


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Last updated: 11Aug2025