Protein: PDP3
NuA3 HAT complex component PDP3 (PWWP domain-containing protein YLR455W)

Gene: PDP3
Organism: Saccharomyces cerevisiae S288C
Interactions: 72
UniProt ID: Q06188

Gene Ontology (top 5):
GO:0000993 - RNA polymerase II complex binding
GO:0003682 - chromatin binding
GO:0005634 - nucleus
GO:0005829 - cytosol
GO:0032968 - positive regulation of transcription elongation by RNA polymerase II

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

963728

H3
Histone H3

5

18

Small-scale

0.924

High

419879

H2A2
Histone H2A.2

4

5

Small-scale

0.860

High

381271

H2B1
Histone H2B.1

3

12

Small-scale

0.839

High

381640

H2B2
Histone H2B.2

3

12

Small-scale

0.839

High

419512

H2A1
Histone H2A.1

1

5

Small-scale

0.691

High

757775

SAS3
Histone acetyltransferase SAS3

4

4

Small-scale

0.691

High

382357

H4
Histone H4

4

5

Small-scale

0.686

High

763377

TAF14
Transcription initiation factor TFIID subunit 14

4

2

Small-scale

0.686

High

823043

ATAD2
ATPase histone chaperone YTA7

4

1

Small-scale

0.672

High

1054171

NTO1
NuA3 HAT complex component NTO1

3

6

Small-scale

0.656

High

865849

EAF6
Chromatin modification-related protein EAF6

3

0

Small-scale

0.634

High

1054165

YNG1
Protein YNG1

3

0

Small-scale

0.634

High

1054170

YRA1
RNA annealing protein YRA1

2

2

Small-scale

0.621

High

743142

STH1
Nuclear protein STH1/NPS1

2

9

Small-scale

0.611

High

744348

CHD1
Chromo domain-containing protein 1

2

9

Small-scale

0.611

High

801024

RFC1
Replication factor C subunit 1

2

2

Small-scale

0.611

High

449011

TOP2
DNA topoisomerase 2

2

2

High-throughput

0.601

High

1054173

NOP56
Nucleolar protein 56

2

4

High-throughput

0.601

High

739779

SPT16
FACT complex subunit SPT16

2

1

Small-scale

0.558

High

1046933

POB3
FACT complex subunit POB3

2

1

Small-scale

0.558

High

708235

TF2B
Transcription initiation factor IIB

2

0

High-throughput

0.551

High

917325

INO80
Chromatin-remodeling ATPase INO80

1

10

Small-scale

0.536

High

923127

BRE5
UBP3-associated protein BRE5

1

2

Small-scale

0.536

High

1030577

UBP3
Ubiquitin carboxyl-terminal hydrolase 3

1

1

Small-scale

0.536

High

1054168

ISW2
ISWI chromatin-remodeling complex ATPase ISW2

1

11

Small-scale

0.536

High

637284

PWP1
Periodic tryptophan protein 1

1

2

High-throughput

0.515

High

1028612

RPA49
DNA-directed RNA polymerase I subunit RPA49

1

1

High-throughput

0.515

High

1044587

HMO1
High mobility group protein 1

1

8

High-throughput

0.515

High

694646

SPT5
Transcription elongation factor SPT5

1

0

Small-scale

0.513

High

722271

XPO1
Exportin-1

1

0

High-throughput

0.513

High

1039692

ELP3
Elongator complex protein 3

1

0

Small-scale

0.513

High

809418

STM1
Suppressor protein STM1

1

0

High-throughput

0.493

High

814388

NOC2
Nucleolar complex protein 2

1

0

High-throughput

0.493

High

812167

IFH1
Protein IFH1

1

0

High-throughput

0.486

High

364751

CDK1
Cyclin-dependent kinase 1

1

0

High-throughput

0.480

High

778921

NNK1
Nitrogen network kinase 1

1

0

High-throughput

0.480

High

777122

BDF1
Bromodomain-containing factor 1

1

10

High-throughput

0.479

High

807150

FKBP3
Peptidyl-prolyl cis-trans isomerase

1

3

High-throughput

0.479

High

850582

RSC8
Chromatin structure-remodeling complex protein RSC8

1

1

High-throughput

0.479

High

925068

APJ1
J domain-containing protein APJ1

1

1

High-throughput

0.479

High

1054163

FKBP4
FK506-binding protein 4

1

3

High-throughput

0.479

High

1050166

RRP5
rRNA biogenesis protein RRP5

1

1

High-throughput

0.470

High

1054164

BRX1
Ribosome biogenesis protein BRX1

1

1

High-throughput

0.470

High

1054167

RRS1
Regulator of ribosome biosynthesis

1

2

High-throughput

0.470

High

1054174

NOP58
Nucleolar protein 58

1

4

High-throughput

0.470

High

470595

RPB2
DNA-directed RNA polymerase II subunit RPB2

1

0

Small-scale

0.458

High

632113

RPB4
DNA-directed RNA polymerase II subunit RPB4

1

0

Small-scale

0.458

High

745617

RSC7
Chromatin structure-remodeling complex subunit RSC7

1

0

High-throughput

0.458

High

816905

NUG1
Nuclear GTP-binding protein NUG1

1

0

High-throughput

0.458

High

1054035

SFH1
Chromatin structure-remodeling complex subunit SFH1

1

0

High-throughput

0.458

High

1054166

SGO1
Shugoshin

1

0

High-throughput

0.458

High

1054169

SCC1
Sister chromatid cohesion protein 1

1

0

High-throughput

0.458

High

1054172

ARP7
Actin-related protein 7

1

0

High-throughput

0.458

High

1054175

HTL1
High temperature lethal protein 1

1

0

High-throughput

0.458

High

525215

HSP71
Heat shock protein SSA1

1

1

High-throughput

0.445

High

527729

HSP72
Heat shock protein SSA2

1

1

High-throughput

0.445

High

676372

MAS5
Mitochondrial protein import protein MAS5

1

1

High-throughput

0.445

High

742444

HSP7F
Heat shock protein homolog SSE1

1

2

High-throughput

0.445

High

826492

DJP1
DnaJ-like protein 1

1

1

High-throughput

0.445

High

1035333

RSC4
Chromatin structure-remodeling complex subunit RSC4

1

10

High-throughput

0.445

High

546354

SSB1
Ribosome-associated molecular chaperone SSB1

1

0

High-throughput

0.426

High

1050234

TAF9
SAGA complex/transcription factor TFIID complex subunit TAF9

1

0

Small-scale

0.426

High

1052937

HSP7Q
Iron-sulfur cluster biogenesis chaperone, mitochondrial

1

2

High-throughput

0.407

High

585382

FBRL
rRNA 2'-O-methyltransferase fibrillarin

1

0

High-throughput

0.269

Low

780321

EBP2
rRNA-processing protein EBP2

1

0

High-throughput

0.269

Low

1043285

HAS1
ATP-dependent RNA helicase HAS1

1

0

High-throughput

0.269

Low

796038

LDB7
Chromatin structure-remodeling complex protein RSC14

1

0

High-throughput

0.249

Low

806067

TDA11
Topoisomerase I damage affected protein 11

1

0

High-throughput

0.249

Low

1041003

RSC9
Chromatin structure-remodeling complex subunit RSC9

1

0

High-throughput

0.249

Low

736599

RIM1
Single-stranded DNA-binding protein RIM1, mitochondrial

1

0

Small-scale

0.232

Low

752757

HSP78
Heat shock protein 78, mitochondrial

1

0

High-throughput

0.232

Low

865076

TCPQ
T-complex protein 1 subunit theta

1

0

High-throughput

0.232

Low


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Last updated: 11Aug2025