Protein: RIM1
Single-stranded DNA-binding protein RIM1, mitochondrial (Mitochondrial ssDNA-binding protein)

Gene: RIM1
Organism: Saccharomyces cerevisiae S288C
Interactions: 122
UniProt ID: P32445

Gene Ontology (top 5):
GO:0003697 - single-stranded DNA binding
GO:0005739 - mitochondrion
GO:0006260 - DNA replication
GO:0006264 - mitochondrial DNA replication

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

736532

RIM1
Single-stranded DNA-binding protein RIM1, mitochondrial

2

2

Small-scale

0.755

High

736537

MG101
Mitochondrial genome maintenance protein MGM101

3

0

High-throughput

0.628

High

736578

BRE5
UBP3-associated protein BRE5

2

0

High-throughput

0.595

High

736605

FMP45
SUR7 family protein FMP45

2

0

High-throughput

0.587

High

454517

PIF1
ATP-dependent DNA helicase PIF1

2

1

Small-scale

0.584

High

736540

HSP78
Heat shock protein 78, mitochondrial

2

1

High-throughput

0.571

High

656946

BUR1
Serine/threonine-protein kinase BUR1

2

1

High-throughput

0.567

High

736591

MSH6
DNA mismatch repair protein MSH6

2

2

High-throughput

0.567

High

510297

HSP77
Import motor subunit, mitochondrial

2

0

High-throughput

0.559

High

647723

RFA1
Replication factor A protein 1

2

0

Small-scale

0.559

High

419650

H2A2
Histone H2A.2

2

1

High-throughput

0.549

High

448438

RAD52
DNA repair and recombination protein RAD52

1

1

High-throughput

0.536

High

533163

GPA2
Guanine nucleotide-binding protein alpha-2 subunit

1

0

High-throughput

0.518

High

736590

TCB3
Tricalbin-3

1

0

High-throughput

0.518

High

736601

MHR1
Large ribosomal subunit protein mL67

1

0

High-throughput

0.518

High

736608

MDM32
Mitochondrial distribution and morphology protein 32

1

0

High-throughput

0.518

High

736564

MMM1
Maintenance of mitochondrial morphology protein 1

1

0

Small-scale

0.513

High

736573

MDM34
Mitochondrial distribution and morphology protein 34

1

0

Small-scale

0.513

High

736586

UBP3
Ubiquitin carboxyl-terminal hydrolase 3

1

0

High-throughput

0.513

High

438271

NOT3
General negative regulator of transcription subunit 3

1

1

High-throughput

0.494

High

736610

TPO4
Polyamine transporter 4

1

1

High-throughput

0.494

High

736612

NOT5
General negative regulator of transcription subunit 5

1

1

High-throughput

0.494

High

653786

APN1
Apurinic-apyrimidinic endonuclease 1

1

0

High-throughput

0.493

High

736609

LSP1
Sphingolipid long chain base-responsive protein LSP1

1

0

High-throughput

0.493

High

736543

MDJ1
DnaJ homolog 1, mitochondrial

1

1

High-throughput

0.479

High

370492

STF1
F(1)-ATPase inhibitor STF1, mitochondrial

1

0

High-throughput

0.458

High

401928

RPB1
DNA-directed RNA polymerase II subunit RPB1

1

0

High-throughput

0.458

High

456361

ILVB
Acetolactate synthase catalytic subunit, mitochondrial

1

0

High-throughput

0.458

High

586066

DPOG
DNA polymerase gamma

1

0

High-throughput

0.458

High

594910

ODPA
Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial

1

0

High-throughput

0.458

High

642129

IDHP
Isocitrate dehydrogenase [NADP], mitochondrial

1

0

High-throughput

0.458

High

647045

RPC2
DNA-directed RNA polymerase III subunit RPC2

1

0

High-throughput

0.458

High

654590

AIM17
Probable oxidoreductase AIM17

1

0

High-throughput

0.458

High

673481

STDH
Catabolic L-serine/threonine dehydratase [Includes: L-serine dehydratase

1

0

High-throughput

0.458

High

677791

ILV6
Acetolactate synthase small subunit, mitochondrial

1

0

High-throughput

0.458

High

678153

IMG1
Large ribosomal subunit protein bL19m

1

0

High-throughput

0.458

High

679479

CDC48
Cell division control protein 48

1

0

High-throughput

0.458

High

694464

COQ3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial

1

0

High-throughput

0.458

High

736536

PT127
Putative mitochondrial translation system component PET127

1

0

High-throughput

0.458

High

736539

TIM23
Mitochondrial import inner membrane translocase subunit TIM23

1

0

High-throughput

0.458

High

736547

RM38
Large ribosomal subunit protein uL14m

1

0

High-throughput

0.458

High

736549

MIC60
MICOS complex subunit MIC60

1

0

High-throughput

0.458

High

736563

COQ7
5-demethoxyubiquinone hydroxylase, mitochondrial

1

0

High-throughput

0.458

High

736565

ETFB
Probable electron transfer flavoprotein subunit beta

1

0

High-throughput

0.458

High

736581

GIS2
Zinc finger protein GIS2

1

0

High-throughput

0.458

High

736583

SAM50
Sorting assembly machinery 50 kDa subunit

1

0

High-throughput

0.458

High

736587

GLRX5
Monothiol glutaredoxin-5, mitochondrial

1

0

High-throughput

0.458

High

736593

VMS1
tRNA endonuclease VMS1

1

0

High-throughput

0.458

High

736595

COX20
Cytochrome c oxidase assembly protein COX20, mitochondrial

1

0

High-throughput

0.458

High

736603

RM35
Large ribosomal subunit protein mL38

1

0

Small-scale

0.458

High

381013

H2B1
Histone H2B.1

1

1

High-throughput

0.437

High

381448

H2B2
Histone H2B.2

1

1

High-throughput

0.437

High

419385

H2A1
Histone H2A.1

1

1

High-throughput

0.437

High

672004

MSH3
DNA mismatch repair protein MSH3

1

2

High-throughput

0.437

High

682903

MSH2
DNA mismatch repair protein MSH2

1

2

High-throughput

0.437

High

726835

HS104
Heat shock protein 104

1

1

Small-scale

0.437

High

736576

TPO2
Polyamine transporter 2

1

1

High-throughput

0.417

High

544151

SSB1
Ribosome-associated molecular chaperone SSB1

1

1

High-throughput

0.407

High

736535

HSP7F
Heat shock protein homolog SSE1

1

1

High-throughput

0.407

High

736557

SSB2
Ribosome-associated molecular chaperone SSB2

1

1

High-throughput

0.407

High

736560

MPH1
ATP-dependent DNA helicase MPH1

3

0

Small-scale

0.334

High

724869

RAD16
DNA repair protein RAD16

2

0

High-throughput

0.324

High

736545

DEF1
RNA polymerase II degradation factor 1

2

0

High-throughput

0.320

High

736585

H3
Histone H3

2

0

High-throughput

0.313

High

736611

CMR1
DNA damage-binding protein CMR1

2

0

High-throughput

0.305

High

736594

RNH1
Ribonuclease H

2

0

High-throughput

0.298

High

625882

HNM1
Choline transporter

1

0

High-throughput

0.282

High

678937

NOT1
General negative regulator of transcription subunit 1

1

0

High-throughput

0.282

High

736534

PUB1
Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

1

0

High-throughput

0.282

High

736541

WHI3
Protein WHI3

1

0

High-throughput

0.282

High

736544

RPC8
DNA-directed RNA polymerase III subunit RPC8

1

0

High-throughput

0.282

High

736546

SFK1
Protein SFK1

1

0

High-throughput

0.282

High

736548

MID2
Cell wall integrity sensor MID2

1

0

High-throughput

0.282

High

736553

POP2
Poly(A) ribonuclease POP2

1

0

High-throughput

0.282

High

736556

LSM4
LSM complex subunit LSM4

1

0

High-throughput

0.282

High

736566

SCD6
Protein SCD6

1

0

High-throughput

0.282

High

736569

BUL1
Ubiquitin ligase-binding protein BUL1

1

0

High-throughput

0.282

High

736572

MUP1
High-affinity methionine permease

1

0

High-throughput

0.282

High

736575

YG3A
Uncharacterized protein YGR130C

1

0

High-throughput

0.282

High

736579

YRF16
Y' element ATP-dependent helicase protein 1 copy 6

1

0

High-throughput

0.282

High

736580

CAF40
Protein CAF40

1

0

High-throughput

0.282

High

736588

PDR12
ATP-dependent permease PDR12

1

0

High-throughput

0.282

High

736596

PEX10
Peroxisome biogenesis factor 10

1

0

High-throughput

0.282

High

736598

YL326
Uncharacterized membrane protein YLR326W

1

0

High-throughput

0.282

High

736604

YL413
Cell membrane protein YLR413W

1

0

High-throughput

0.282

High

672756

SNT1
Probable DNA-binding protein SNT1

1

0

High-throughput

0.279

Low

736559

SEC24
Protein transport protein SEC24

1

0

High-throughput

0.279

Low

736570

CLA4
Serine/threonine-protein kinase CLA4

1

0

High-throughput

0.279

Low

736533

SPT16
FACT complex subunit SPT16

1

0

High-throughput

0.269

Low

736551

APN2
DNA-(apurinic or apyrimidinic site) endonuclease 2

1

0

High-throughput

0.269

Low

736552

DNA2
DNA replication ATP-dependent helicase/nuclease DNA2 [Includes: DNA replication nuclease DNA2

1

0

High-throughput

0.269

Low

736554

SAW1
Single-strand annealing weakened protein 1

1

0

High-throughput

0.269

Low

736558

6P21
6-phosphofructo-2-kinase 1

1

0

High-throughput

0.269

Low

736567

SPC1
Signal peptidase complex subunit 1

1

0

High-throughput

0.269

Low

736597

BUR2
Protein BUR2

1

0

High-throughput

0.269

Low

736606

RTC1
Restriction of telomere capping protein 1

1

0

High-throughput

0.261

Low

736542

TOR1
Serine/threonine-protein kinase TOR1

1

0

High-throughput

0.251

Low

736562

AZF1
Transcription factor AZF1

1

0

Small-scale

0.251

Low

364407

CDK1
Cyclin-dependent kinase 1

1

0

High-throughput

0.249

Low

381946

H4
Histone H4

1

0

High-throughput

0.249

Low

645330

XRN1
5'-3' exoribonuclease 1

1

0

High-throughput

0.249

Low

682205

SPB4
ATP-dependent rRNA helicase SPB4

1

0

High-throughput

0.249

Low

706485

TF2B
Transcription initiation factor IIB

1

0

High-throughput

0.249

Low

736538

GSP1
GTP-binding nuclear protein GSP1/CNR1

1

0

High-throughput

0.249

Low

736550

ATG8
Autophagy-related protein 8

1

0

High-throughput

0.249

Low

736555

RT105
Regulator of Ty1 transposition protein 105

1

0

Small-scale

0.249

Low

736561

DSN1
Kinetochore-associated protein DSN1

1

0

High-throughput

0.249

Low

736568

MOG1
Nuclear import protein MOG1

1

0

High-throughput

0.249

Low

736571

VATG
V-type proton ATPase subunit G

1

0

High-throughput

0.249

Low

736574

PESC
Pescadillo homolog

1

0

High-throughput

0.249

Low

736582

IGO1
mRNA stability protein IGO1

1

0

Small-scale

0.249

Low

736584

ORC1
Origin recognition complex subunit 1

1

0

High-throughput

0.249

Low

736589

TOM1
E3 ubiquitin-protein ligase TOM1

1

0

High-throughput

0.249

Low

736592

SIZ1
E3 SUMO-protein ligase SIZ1

1

0

High-throughput

0.249

Low

736600

TFC6
Transcription factor tau 91 kDa subunit

1

0

High-throughput

0.249

Low

736607

SGO1
Shugoshin

1

0

High-throughput

0.249

Low

523347

HSP71
Heat shock protein SSA1

1

0

High-throughput

0.232

Low

675809

MAS5
Mitochondrial protein import protein MAS5

1

0

High-throughput

0.232

Low

736577

RT102
Regulator of Ty1 transposition protein 102

1

0

High-throughput

0.232

Low

736599

PDP3
NuA3 HAT complex component PDP3

1

0

Small-scale

0.232

Low

736602

RSC3
Chromatin structure-remodeling complex protein RSC3

1

0

High-throughput

0.232

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025