Protein: RBM3
RNA-binding protein 3 (RNA-binding motif protein 3) (RNPL)

Gene: RBM3
Organism: Homo sapiens
Interactions: 160
UniProt ID: P98179

Gene Ontology (top 5):
GO:0003723 - RNA binding
GO:0005634 - nucleus
GO:0005654 - nucleoplasm
GO:0005681 - spliceosomal complex
GO:0005737 - cytoplasm

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

478000

SNRPA
U1 small nuclear ribonucleoprotein A

6

20

High-throughput

0.951

High

794442

RBMX
RNA-binding motif protein, X chromosome

5

16

High-throughput

0.933

High

515837

RBY1A
RNA-binding motif protein, Y chromosome, family 1 member A1

4

19

High-throughput

0.911

High

1023239

RBY1F
RNA-binding motif protein, Y chromosome, family 1 member F/J

3

20

High-throughput

0.871

High

1023241

ELAV1
ELAV-like protein 1

3

19

Small-scale

0.843

High

1009187

PRR3
Proline-rich protein 3

2

4

High-throughput

0.783

High

1016398

SRSF3
Serine/arginine-rich splicing factor 3

2

20

High-throughput

0.783

High

1023253

RBPS2
RNA-binding protein with multiple splicing 2

2

3

High-throughput

0.783

High

1023311

IF2B2
Insulin-like growth factor 2 mRNA-binding protein 2

2

20

Small-scale

0.776

High

1023247

KHDR2
KH domain-containing, RNA-binding, signal transduction-associated protein 2

5

20

High-throughput

0.722

High

965623

HNRPK
Heterogeneous nuclear ribonucleoprotein K

4

20

High-throughput

0.704

High

320325

PHF14
PHD finger protein 14

1

1

High-throughput

0.691

High

485072

ROA1
Heterogeneous nuclear ribonucleoprotein A1

1

20

High-throughput

0.691

High

162542

ANM5
Protein arginine N-methyltransferase 5

2

15

High-throughput

0.628

High

1023264

FABD
Malonyl-CoA-acyl carrier protein transacylase, mitochondrial

2

3

High-throughput

0.628

High

1023266

SUV3
ATP-dependent RNA helicase SUPV3L1, mitochondrial

2

2

High-throughput

0.628

High

1023285

NIF3L
NIF3-like protein 1

2

2

High-throughput

0.628

High

1023291

NGRN
Neugrin

2

2

High-throughput

0.628

High

1023301

PAI2B
Polyadenylate-binding protein-interacting protein 2B

2

6

High-throughput

0.628

High

1023305

SYYM
Tyrosine--tRNA ligase, mitochondrial

2

2

High-throughput

0.628

High

214776

HNRPR
Heterogeneous nuclear ribonucleoprotein R

1

20

High-throughput

0.621

High

1023230

ROA0
Heterogeneous nuclear ribonucleoprotein A0

1

20

High-throughput

0.621

High

1023267

HNRLL
Heterogeneous nuclear ribonucleoprotein L-like

1

20

High-throughput

0.621

High

135170

IF2B3
Insulin-like growth factor 2 mRNA-binding protein 3

1

20

Small-scale

0.618

High

400654

RAF1
RAF proto-oncogene serine/threonine-protein kinase

1

8

High-throughput

0.618

High

472649

RU17
U1 small nuclear ribonucleoprotein 70 kDa

1

20

High-throughput

0.618

High

667773

CDK2
Cyclin-dependent kinase 2

1

4

High-throughput

0.618

High

911552

NCBP2
Nuclear cap-binding protein subunit 2

1

19

Small-scale

0.618

High

960999

MGN
Protein mago nashi homolog

1

5

Small-scale

0.618

High

1023223

M4K2
Mitogen-activated protein kinase kinase kinase kinase 2

1

4

High-throughput

0.618

High

1023227

ELAV2
ELAV-like protein 2

1

19

Small-scale

0.618

High

1023240

SF3A2
Splicing factor 3A subunit 2

1

6

Small-scale

0.618

High

1023242

LARP7
La-related protein 7

1

20

High-throughput

0.618

High

1023258

RALYL
RNA-binding Raly-like protein

1

20

Small-scale

0.618

High

1023289

RC3H2
Roquin-2

1

13

High-throughput

0.618

High

1023298

ZRAN1
Ubiquitin thioesterase ZRANB1

1

8

High-throughput

0.618

High

1023309

RBM8A
RNA-binding protein 8A

1

19

Small-scale

0.618

High

1023234

CUL4B
Cullin-4B

2

20

High-throughput

0.611

High

284664

KHDR3
KH domain-containing, RNA-binding, signal transduction-associated protein 3

2

20

High-throughput

0.606

High

1023236

PCBP1
Poly(rC)-binding protein 1

2

20

High-throughput

0.606

High

1023260

MYPOP
Myb-related transcription factor, partner of profilin

2

3

High-throughput

0.606

High

1023306

CHTOP
Chromatin target of PRMT1 protein

2

1

High-throughput

0.606

High

650701

ROA2
Heterogeneous nuclear ribonucleoproteins A2/B1

1

20

Small-scale

0.590

High

371769

MYC
Myc proto-oncogene protein

2

20

High-throughput

0.584

High

1023246

RC3H1
Roquin-1

2

9

High-throughput

0.584

High

1023288

LN28A
Protein lin-28 homolog A

1

20

High-throughput

0.575

High

1023245

SYAM
Alanine--tRNA ligase, mitochondrial

2

2

High-throughput

0.574

High

395914

ESR1
Estrogen receptor

2

20

High-throughput

0.571

High

440028

LCK
Tyrosine-protein kinase Lck

2

4

High-throughput

0.571

High

631167

RAB5A
Ras-related protein Rab-5A

2

5

High-throughput

0.571

High

157244

CTRO
Citron Rho-interacting kinase

1

10

High-throughput

0.553

High

1023268

TITIN
Titin

1

13

Small-scale

0.553

High

529629

TAU
Microtubule-associated protein tau

2

12

High-throughput

0.552

High

693694

RL10
Large ribosomal subunit protein uL16

1

4

High-throughput

0.536

High

846238

MATR3
Matrin-3

1

17

High-throughput

0.536

High

888596

YLPM1
YLP motif-containing protein 1

1

7

High-throughput

0.536

High

926334

BLM
RecQ-like DNA helicase BLM

1

20

High-throughput

0.536

High

1023231

CUL1
Cullin-1

1

20

High-throughput

0.536

High

1023232

CUL2
Cullin-2

1

20

High-throughput

0.536

High

1023233

CUL3
Cullin-3

1

20

High-throughput

0.536

High

1023251

KLH24
Kelch-like protein 24

1

1

High-throughput

0.536

High

1023252

WDR82
WD repeat-containing protein 82

1

17

High-throughput

0.536

High

1023263

CAND1
Cullin-associated NEDD8-dissociated protein 1

1

12

High-throughput

0.536

High

1023271

CSN5
COP9 signalosome complex subunit 5

1

9

High-throughput

0.536

High

1023272

CUL5
Cullin-5

1

20

High-throughput

0.536

High

1023275

DCNL1
DCN1-like protein 1

1

3

High-throughput

0.536

High

1023278

ANM6
Protein arginine N-methyltransferase 6

1

15

High-throughput

0.536

High

1023279

ANM1
Protein arginine N-methyltransferase 1

1

15

High-throughput

0.536

High

1023286

DHX36
ATP-dependent DNA/RNA helicase DHX36

1

18

High-throughput

0.536

High

1023295

FAKD2
FAST kinase domain-containing protein 2, mitochondrial

1

7

High-throughput

0.536

High

1023297

DUX4
Double homeobox protein 4

1

3

High-throughput

0.515

High

1023255

NEK10
Serine/threonine-protein kinase Nek10

1

8

High-throughput

0.514

High

1023281

THUM3
tRNA

1

0

High-throughput

0.513

High

1023308

MB212
Protein mab-21-like 2

1

0

High-throughput

0.513

High

333861

PAPS2
Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2

1

0

High-throughput

0.493

High

1023292

ANM8
Protein arginine N-methyltransferase 8

1

15

High-throughput

0.489

High

183447

CASC3
Protein CASC3

1

5

Small-scale

0.479

High

259797

BRD4
Bromodomain-containing protein 4

1

5

High-throughput

0.479

High

271034

PTCD1
Pentatricopeptide repeat-containing protein 1, mitochondrial

1

2

Small-scale

0.479

High

286948

PRKRA
Interferon-inducible double-stranded RNA-dependent protein kinase activator A

1

18

Small-scale

0.479

High

375409

RASK
GTPase KRas

1

9

High-throughput

0.479

High

406070

MYCN
N-myc proto-oncogene protein

1

20

High-throughput

0.479

High

413626

P53
Cellular tumor antigen p53

1

2

Small-scale

0.479

High

507841

UBC
Polyubiquitin-C [Cleaved into: Ubiquitin]

1

9

High-throughput

0.479

High

518976

RO60
RNA-binding protein RO60

1

1

Small-scale

0.479

High

520554

RARA
Retinoic acid receptor alpha

1

20

Small-scale

0.479

High

577711

PLAK
Junction plakoglobin

1

7

Small-scale

0.479

High

664862

RAE1
Rab proteins geranylgeranyltransferase component A 1

1

3

Small-scale

0.479

High

695219

RFA1
Replication protein A 70 kDa DNA-binding subunit

1

4

Small-scale

0.479

High

766452

PHB1
Prohibitin 1

1

10

High-throughput

0.479

High

830565

CCNF
Cyclin-F

1

9

High-throughput

0.479

High

851518

GATA4
Transcription factor GATA-4

1

2

High-throughput

0.479

High

881881

TCPG
T-complex protein 1 subunit gamma

1

6

Small-scale

0.479

High

887974

MCM2
DNA replication licensing factor MCM2

1

13

High-throughput

0.479

High

896730

DYN2
Dynamin-2

1

1

Small-scale

0.479

High

899348

TCPD
T-complex protein 1 subunit delta

1

5

Small-scale

0.479

High

902448

RT29
Small ribosomal subunit protein mS29

1

1

Small-scale

0.479

High

929896

UBP14
Ubiquitin carboxyl-terminal hydrolase 14

1

6

High-throughput

0.479

High

937714

FOXA1
Hepatocyte nuclear factor 3-alpha

1

6

High-throughput

0.479

High

971405

1433E
14-3-3 protein epsilon

1

7

Small-scale

0.479

High

979502

H4
Histone H4

1

4

High-throughput

0.479

High

1012808

RT09
Small ribosomal subunit protein uS9m

1

4

Small-scale

0.479

High

1023218

VIGLN
Vigilin

1

20

High-throughput

0.479

High

1023224

SEPR
Prolyl endopeptidase FAP

1

1

Small-scale

0.479

High

1023225

ILF2
Interleukin enhancer-binding factor 2

1

15

Small-scale

0.479

High

1023226

ILF3
Interleukin enhancer-binding factor 3

1

20

Small-scale

0.479

High

1023228

CAF1A
Chromatin assembly factor 1 subunit A

1

3

Small-scale

0.479

High

1023229

REST
RE1-silencing transcription factor

1

2

High-throughput

0.479

High

1023235

U5S1
116 kDa U5 small nuclear ribonucleoprotein component

1

7

High-throughput

0.479

High

1023238

ELOB
Elongin-B

1

1

Small-scale

0.479

High

1023244

DDX6L
Probable ATP-dependent RNA helicase DDX60-like

1

18

Small-scale

0.479

High

1023248

VIR
Protein virilizer homolog

1

1

High-throughput

0.479

High

1023249

KLD10
Kelch domain-containing protein 10

1

4

Small-scale

0.479

High

1023250

WDR74
WD repeat-containing protein 74

1

17

Small-scale

0.479

High

1023256

UBP34
Ubiquitin carboxyl-terminal hydrolase 34

1

8

Small-scale

0.479

High

1023257

MEPCE
7SK snRNA methylphosphate capping enzyme

1

5

High-throughput

0.479

High

1023261

KIF27
Kinesin-like protein KIF27

1

1

Small-scale

0.479

High

1023262

ZCH18
Zinc finger CCCH domain-containing protein 18

1

14

High-throughput

0.479

High

1023265

SMC5
Structural maintenance of chromosomes protein 5

1

6

High-throughput

0.479

High

1023269

RT31
Small ribosomal subunit protein mS31

1

1

Small-scale

0.479

High

1023270

RENT1
Regulator of nonsense transcripts 1

1

12

Small-scale

0.479

High

1023274

SPDLY
Protein Spindly

1

1

High-throughput

0.479

High

1023277

DDRGK
DDRGK domain-containing protein 1

1

5

High-throughput

0.479

High

1023280

OVOL2
Transcription factor Ovo-like 2

1

1

Small-scale

0.479

High

1023282

FACD2
Fanconi anemia group D2 protein

1

6

High-throughput

0.479

High

1023283

RM01
Large ribosomal subunit protein uL1m

1

3

Small-scale

0.479

High

1023284

IKBZ
NF-kappa-B inhibitor zeta

1

9

Small-scale

0.479

High

1023290

MOV10
Helicase MOV-10

1

12

Small-scale

0.479

High

1023293

ZCHC3
Zinc finger CCHC domain-containing protein 3

1

8

Small-scale

0.479

High

1023296

F120A
Constitutive coactivator of PPAR-gamma-like protein 1

1

8

Small-scale

0.479

High

1023302

FZR1
Fizzy-related protein homolog

1

16

High-throughput

0.479

High

1023304

RT28
Small ribosomal subunit protein bS1m

1

1

Small-scale

0.479

High

1023307

TRRAP
Transformation/transcription domain-associated protein

1

2

High-throughput

0.479

High

1023310

RT18B
Small ribosomal subunit protein mS40

1

1

Small-scale

0.479

High

449648

CALCA
Calcitonin gene-related peptide 1

1

0

Small-scale

0.458

High

914582

RM12
Large ribosomal subunit protein bL12m

1

0

Small-scale

0.458

High

984621

RL39
Large ribosomal subunit protein eL39

1

0

Small-scale

0.458

High

1023220

FABP5
Fatty acid-binding protein 5

1

0

Small-scale

0.458

High

1023237

ELOC
Elongin-C

1

0

Small-scale

0.458

High

1023254

UBR3
E3 ubiquitin-protein ligase UBR3

1

0

Small-scale

0.458

High

1023259

RM52
Large ribosomal subunit protein mL52

1

0

Small-scale

0.458

High

1023273

FWCH2
FLYWCH family member 2

1

0

Small-scale

0.458

High

1023300

CDV3
Protein CDV3 homolog

1

0

Small-scale

0.458

High

1023243

NCBP3
Nuclear cap-binding protein subunit 3

1

5

High-throughput

0.445

High

1023294

SPHK1
Sphingosine kinase 1

1

1

Small-scale

0.445

High

1023303

DICER
Endoribonuclease Dicer

1

20

Small-scale

0.445

High

295734

AP1G2
AP-1 complex subunit gamma-like 2

1

5

Small-scale

0.437

High

389292

FINC
Fibronectin

1

8

High-throughput

0.437

High

565347

ITA4
Integrin alpha-4

1

4

High-throughput

0.437

High

1023276

C2AIL
CDKN2AIP N-terminal-like protein

1

1

Small-scale

0.437

High

886753

CEBPA
CCAAT/enhancer-binding protein alpha

1

10

High-throughput

0.408

High

619740

VCAM1
Vascular cell adhesion protein 1

1

10

High-throughput

0.407

High

1023287

MLP3A
Microtubule-associated protein 1 light chain 3 alpha

1

20

High-throughput

0.407

High

1023299

NAGK
N-acetyl-D-glucosamine kinase

2

0

High-throughput

0.328

High

66777

CC070
UPF0524 protein C3orf70

1

0

Small-scale

0.249

Low

532136

RET3
Retinol-binding protein 3

1

0

Small-scale

0.249

Low

1012677

RT06
Small ribosomal subunit protein bS6m

1

0

Small-scale

0.249

Low

1023219

NDP
Norrin

1

0

Small-scale

0.249

Low

1023221

ACHE
Acetylcholine receptor subunit epsilon

1

0

Small-scale

0.249

Low

1023222

TMM94
Transmembrane protein 94

1

0

Small-scale

0.249

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025