Protein: RRP41
Exosome complex component SKI6 (Extracellular mutant protein 20) (Ribosomal RNA-processing protein 41) (Superkiller protein 6)

Gene: RRP41, SKI6
Organism: Saccharomyces cerevisiae S288C
Interactions: 86
UniProt ID: P46948

Gene Ontology (top 5):
GO:0000176 - nuclear exosome (RNase complex)
GO:0000177 - cytoplasmic exosome (RNase complex)
GO:0000178 - exosome (RNase complex)
GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 - RNA binding

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

809587

RRP45
Exosome complex component RRP45

14

20

Small-scale

0.986

High

809596

RRP44
Exosome complex exonuclease DIS3

12

20

Small-scale

0.982

High

809565

RRP46
Exosome complex component RRP46

13

18

Small-scale

0.980

High

809572

CSL4
Exosome complex component CSL4

12

13

Small-scale

0.979

High

754968

RRP4
Exosome complex component RRP4

9

20

Small-scale

0.971

High

630218

RRP43
Exosome complex component RRP43

9

2

Small-scale

0.970

High

809562

MTR3
Exosome complex component MTR3

8

2

Small-scale

0.967

High

809597

RRP40
Exosome complex component RRP40

7

14

Small-scale

0.962

High

809603

RRP6
Exosome complex exonuclease RRP6

15

13

Small-scale

0.760

High

809598

SKI7
Superkiller protein 7

9

9

Small-scale

0.753

High

809605

RRP42
Exosome complex component RRP42

8

20

Small-scale

0.748

High

809582

DHR1
Probable ATP-dependent RNA helicase DHR1

5

2

High-throughput

0.712

High

792479

UTP10
U3 small nucleolar RNA-associated protein 10

4

2

High-throughput

0.691

High

809571

MPP6
M-phase phosphoprotein 6 homolog

3

2

Small-scale

0.664

High

748644

ENP1
Essential nuclear protein 1

3

2

High-throughput

0.640

High

809585

RRP5
rRNA biogenesis protein RRP5

1

7

High-throughput

0.618

High

809577

IMA1
Importin subunit alpha

2

2

High-throughput

0.588

High

634666

KRR1
KRR1 small subunit processome component

2

2

High-throughput

0.584

High

809584

UTP14
U3 small nucleolar RNA-associated protein 14

2

3

High-throughput

0.584

High

809592

NOC4
Nucleolar complex protein 4

2

2

High-throughput

0.584

High

494292

HSP72
Heat shock protein SSA2

2

7

High-throughput

0.552

High

585331

MYO2
Myosin-2

2

1

High-throughput

0.537

High

809580

SYF1
Pre-mRNA-splicing factor SYF1

1

9

High-throughput

0.508

High

477341

UBI4P
Polyubiquitin [Cleaved into: Ubiquitin]

1

2

High-throughput

0.501

High

641134

DAL80
Nitrogen regulatory protein DAL80

1

0

High-throughput

0.486

High

809575

ADA2
Transcriptional adapter 2

1

0

High-throughput

0.486

High

409845

NOT2
General negative regulator of transcription subunit 2

1

1

Small-scale

0.479

High

566194

EST1
Telomere elongation protein EST1

1

1

High-throughput

0.479

High

571903

SKI3
Superkiller protein 3

1

4

High-throughput

0.479

High

630506

RRP7
Ribosomal RNA-processing protein 7

1

2

High-throughput

0.479

High

635599

PWP2
Periodic tryptophan protein 2

1

11

High-throughput

0.479

High

662602

TF2B
Transcription initiation factor IIB

1

2

High-throughput

0.479

High

707106

DCA13
Protein SOF1

1

6

High-throughput

0.479

High

711048

UTP11
U3 small nucleolar RNA-associated protein 11

1

2

High-throughput

0.479

High

715940

UTP20
U3 small nucleolar RNA-associated protein 20

1

2

High-throughput

0.479

High

728273

DEF1
RNA polymerase II degradation factor 1

1

3

High-throughput

0.479

High

755177

LRP1
Exosome complex protein LRP1

1

2

High-throughput

0.479

High

756749

UTP9
U3 small nucleolar RNA-associated protein 9

1

2

High-throughput

0.479

High

767377

UTP7
U3 small nucleolar RNA-associated protein 7

1

2

High-throughput

0.479

High

772641

UTP18
U3 small nucleolar RNA-associated protein 18

1

3

High-throughput

0.479

High

775368

FAF1
Protein FAF1

1

2

High-throughput

0.479

High

784505

DIM1
Dimethyladenosine transferase

1

1

High-throughput

0.479

High

809560

MTR4
ATP-dependent RNA helicase DOB1

1

17

High-throughput

0.479

High

809561

MPP10
U3 small nucleolar RNA-associated protein MPP10

1

2

High-throughput

0.479

High

809564

UTP22
U3 small nucleolar RNA-associated protein 22

1

3

High-throughput

0.479

High

809566

UTP8
U3 small nucleolar RNA-associated protein 8

1

2

High-throughput

0.479

High

809569

NRD1
Protein NRD1

1

1

Small-scale

0.479

High

809570

PAP2
Poly(A) RNA polymerase protein 2

1

3

Small-scale

0.479

High

809573

NAT10
RNA cytidine acetyltransferase

1

2

High-throughput

0.479

High

809574

IMP4
U3 small nucleolar ribonucleoprotein protein IMP4

1

2

High-throughput

0.479

High

809576

UTP6
U3 small nucleolar RNA-associated protein 6

1

2

High-throughput

0.479

High

809578

UTP17
NET1-associated nuclear protein 1

1

18

High-throughput

0.479

High

809581

UTP5
U3 small nucleolar RNA-associated protein 5

1

11

High-throughput

0.479

High

809583

UTP15
U3 small nucleolar RNA-associated protein 15

1

7

High-throughput

0.479

High

809586

FCF1
rRNA-processing protein FCF1

1

2

High-throughput

0.479

High

809588

UTP13
U3 small nucleolar RNA-associated protein 13

1

11

High-throughput

0.479

High

809589

UTP21
U3 small nucleolar RNA-associated protein 21

1

15

High-throughput

0.479

High

809590

NEP1
Ribosomal RNA small subunit methyltransferase NEP1

1

2

High-throughput

0.479

High

809591

RRP9
Ribosomal RNA-processing protein 9

1

10

High-throughput

0.479

High

809593

BFR2
Protein BFR2

1

2

High-throughput

0.479

High

809594

UTP4
U3 small nucleolar RNA-associated protein 4

1

12

High-throughput

0.479

High

809595

RCL1
RNA 3'-terminal phosphate cyclase-like protein

1

2

High-throughput

0.479

High

809599

UTP16
U3 small nucleolar RNA-associated protein 16

1

2

High-throughput

0.479

High

809600

BMS1
Ribosome biogenesis protein BMS1

1

2

High-throughput

0.479

High

809601

FCF2
rRNA-processing protein FCF2

1

2

High-throughput

0.479

High

809602

SAS10
Something about silencing protein 10

1

3

High-throughput

0.479

High

809604

UTP12
U3 small nucleolar RNA-associated protein 12

1

14

High-throughput

0.479

High

809606

NOP56
Nucleolar protein 56

1

7

High-throughput

0.479

High

809607

NOP58
Nucleolar protein 58

1

7

High-throughput

0.479

High

809609

RRP12
Ribosomal RNA-processing protein 12

1

1

High-throughput

0.479

High

809610

NOP14
Nucleolar complex protein 14

1

2

High-throughput

0.479

High

775202

ULP2
Ubiquitin-like-specific protease 2

1

0

High-throughput

0.460

High

713703

NOT4
General negative regulator of transcription subunit 4

1

0

Small-scale

0.458

High

809567

CF130
Protein CAF130

1

0

Small-scale

0.458

High

809568

COAD
Phosphopantetheine adenylyltransferase

1

0

High-throughput

0.458

High

809579

SCC2
Sister chromatid cohesion protein 2

1

0

High-throughput

0.458

High

809608

NOT5
General negative regulator of transcription subunit 5

1

0

Small-scale

0.458

High

491641

HSP71
Heat shock protein SSA1

1

7

High-throughput

0.445

High

511794

SSB1
Ribosome-associated molecular chaperone SSB1

1

6

High-throughput

0.445

High

520619

YPK1
Serine/threonine-protein kinase YPK1

1

0

High-throughput

0.426

High

733264

SET3
SET domain-containing protein 3

1

0

High-throughput

0.426

High

746835

TRM7
tRNA

1

1

High-throughput

0.417

High

478311

HSP77
Import motor subunit, mitochondrial

1

7

High-throughput

0.407

High

809563

IMDH4
Inosine-5'-monophosphate dehydrogenase 4

1

3

High-throughput

0.407

High

561832

ATE1
Arginyl-tRNA--protein transferase 1

1

0

High-throughput

0.249

Low

586168

PMA2
Plasma membrane ATPase 2

1

0

High-throughput

0.249

Low


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Last updated: 15 Jul 2024