Protein: RL39
Large ribosomal subunit protein eL39 (60S ribosomal protein L39) (L46) (YL40)

Gene: RL39, RPL39
Organism: Saccharomyces cerevisiae S288C
Interactions: 112
UniProt ID: P04650

Gene Ontology (top 5):
GO:0002181 - cytoplasmic translation
GO:0003735 - structural constituent of ribosome
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0022625 - cytosolic large ribosomal subunit

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

414963

RL17A
Large ribosomal subunit protein uL22A

1

1

High-throughput

0.618

High

414964

RL26A
Large ribosomal subunit protein uL24A

1

1

High-throughput

0.618

High

415029

RL17B
Large ribosomal subunit protein uL22B

1

1

High-throughput

0.618

High

415037

RL26B
Large ribosomal subunit protein uL24B

1

1

High-throughput

0.618

High

414992

NAP1
Nucleosome assembly protein

2

5

High-throughput

0.595

High

409809

RL25
Large ribosomal subunit protein uL23

1

0

High-throughput

0.586

High

415038

BRE5
UBP3-associated protein BRE5

1

0

High-throughput

0.513

High

415012

RIM11
Serine/threonine-protein kinase RIM11/MSD1

1

1

High-throughput

0.508

High

414993

HAL4
Serine/threonine-protein kinase HAL4/SAT4

1

1

High-throughput

0.501

High

415000

KCC1
Calcium/calmodulin-dependent protein kinase I

1

2

High-throughput

0.501

High

415006

KKQ8
Probable serine/threonine-protein kinase KKQ8

1

1

High-throughput

0.501

High

414995

YIH1
Protein IMPACT homolog

1

0

Small-scale

0.493

High

415060

WTM2
Transcriptional modulator WTM2

1

0

High-throughput

0.486

High

414987

GCN2
eIF-2-alpha kinase GCN2

1

0

Small-scale

0.480

High

154095

RL36B
Large ribosomal subunit protein eL36B

1

1

High-throughput

0.479

High

383034

RLA4
Large ribosomal subunit protein P2B

1

1

High-throughput

0.479

High

409638

RL24A
Large ribosomal subunit protein eL24A

1

1

High-throughput

0.479

High

414960

RLA2
Large ribosomal subunit protein P2A

1

1

High-throughput

0.479

High

414961

RL7A
Large ribosomal subunit protein uL30A

1

3

High-throughput

0.479

High

414962

RL9A
Large ribosomal subunit protein uL6A

1

1

High-throughput

0.479

High

414965

RL33A
Large ribosomal subunit protein eL33A

1

1

High-throughput

0.479

High

414966

RL36A
Large ribosomal subunit protein eL36A

1

1

High-throughput

0.479

High

414970

RS31
Ubiquitin-ribosomal protein eS31 fusion protein [Cleaved into: Ubiquitin; Small ribosomal subunit protein eS31

1

1

High-throughput

0.479

High

414972

RL11A
Large ribosomal subunit protein uL5A

1

3

High-throughput

0.479

High

414979

RL19B
Large ribosomal subunit protein eL19

1

2

High-throughput

0.479

High

414982

RL4A
Large ribosomal subunit protein uL4A

1

1

High-throughput

0.479

High

414988

RL8A
Large ribosomal subunit protein eL8A

1

1

High-throughput

0.479

High

414990

RL24B
Large ribosomal subunit protein eL24B

1

1

High-throughput

0.479

High

414997

RL5
Large ribosomal subunit protein uL18

1

2

High-throughput

0.479

High

414998

RL16A
Large ribosomal subunit protein uL13A

1

1

High-throughput

0.479

High

414999

RL16B
Large ribosomal subunit protein uL13B

1

1

High-throughput

0.479

High

415002

RL8B
Large ribosomal subunit protein eL8B

1

1

High-throughput

0.479

High

415004

ZUO1
Zuotin

1

1

High-throughput

0.479

High

415008

RL14A
Large ribosomal subunit protein eL14A

1

1

High-throughput

0.479

High

415013

RL14B
Large ribosomal subunit protein eL14B

1

1

High-throughput

0.479

High

415021

RL13B
Large ribosomal subunit protein eL13B

1

1

High-throughput

0.479

High

415023

RL34B
Large ribosomal subunit protein eL34B

1

1

High-throughput

0.479

High

415025

RL33B
Large ribosomal subunit protein eL33B

1

1

High-throughput

0.479

High

415031

RL37A
Large ribosomal subunit protein eL37A

1

1

High-throughput

0.479

High

415033

RL4B
Large ribosomal subunit protein uL4B

1

1

High-throughput

0.479

High

415034

RL9B
Large ribosomal subunit protein uL6B

1

1

High-throughput

0.479

High

415035

RL37B
Large ribosomal subunit protein eL37B

1

1

High-throughput

0.479

High

415036

LSG1
Large subunit GTPase 1

1

1

High-throughput

0.479

High

415043

RL34A
Large ribosomal subunit protein eL34A

1

1

High-throughput

0.479

High

415046

RL21A
Large ribosomal subunit protein eL21A

1

1

High-throughput

0.479

High

415047

TOM1
E3 ubiquitin-protein ligase TOM1

1

2

High-throughput

0.479

High

415048

ARX1
Probable metalloprotease ARX1

1

2

High-throughput

0.479

High

415049

HMO1
High mobility group protein 1

1

4

High-throughput

0.479

High

415061

RL7B
Large ribosomal subunit protein uL30B

1

3

High-throughput

0.479

High

415062

RL21B
Large ribosomal subunit protein eL21B

1

1

High-throughput

0.479

High

415063

RL13A
Large ribosomal subunit protein eL13A

1

1

High-throughput

0.479

High

415064

RL11B
Large ribosomal subunit protein uL5B

1

3

High-throughput

0.479

High

414958

RLA0
Large ribosomal subunit protein uL10

1

0

High-throughput

0.458

High

414959

RLA1
Large ribosomal subunit protein P1A

1

0

High-throughput

0.458

High

414967

RL29
Large ribosomal subunit protein eL29

1

0

High-throughput

0.458

High

414968

RL15A
Large ribosomal subunit protein eL15A

1

0

High-throughput

0.458

High

414969

RL22A
Large ribosomal subunit protein eL22A

1

0

High-throughput

0.458

High

414971

C1TM
C-1-tetrahydrofolate synthase, mitochondrial

1

0

High-throughput

0.458

High

414973

RL27B
Large ribosomal subunit protein eL27B

1

0

High-throughput

0.458

High

414974

RL31A
Large ribosomal subunit protein eL31A

1

0

High-throughput

0.458

High

414975

RL43B
Large ribosomal subunit protein eL43B

1

0

High-throughput

0.458

High

414976

RL2A
Large ribosomal subunit protein uL2A

1

0

High-throughput

0.458

High

414977

RL18B
Large ribosomal subunit protein eL18B

1

0

High-throughput

0.458

High

414978

RL12B
Large ribosomal subunit protein uL11B

1

0

High-throughput

0.458

High

414980

RL35A
Large ribosomal subunit protein uL29A

1

0

High-throughput

0.458

High

414981

RS32B
Small ribosomal subunit protein eS32B

1

0

High-throughput

0.458

High

414983

SSB1
Ribosome-associated molecular chaperone SSB1

1

0

Small-scale

0.458

High

414984

RL30
Large ribosomal subunit protein eL30

1

0

High-throughput

0.458

High

414985

RL3
Large ribosomal subunit protein uL3

1

0

High-throughput

0.458

High

414991

DBP2
ATP-dependent RNA helicase DBP2

1

0

High-throughput

0.458

High

414996

TAH1
TPR repeat-containing protein associated with Hsp90

1

0

Small-scale

0.458

High

415003

HS104
Heat shock protein 104

1

0

High-throughput

0.458

High

415005

GSP1
GTP-binding nuclear protein GSP1/CNR1

1

0

High-throughput

0.458

High

415010

GLYM
Serine hydroxymethyltransferase, mitochondrial

1

0

High-throughput

0.458

High

415011

RL32
Large ribosomal subunit protein eL32

1

0

High-throughput

0.458

High

415015

SSZ1
Ribosome-associated complex subunit SSZ1

1

0

High-throughput

0.458

High

415016

STM1
Suppressor protein STM1

1

0

High-throughput

0.458

High

415017

LAA1
AP-1 accessory protein LAA1

1

0

High-throughput

0.458

High

415018

ECM1
Shuttling pre-60S factor ECM1

1

0

High-throughput

0.458

High

415019

IF2P
Eukaryotic translation initiation factor 5B

1

0

High-throughput

0.458

High

415022

YIQ1
Uncharacterized protein YIL161W

1

0

High-throughput

0.458

High

415026

RL10
Large ribosomal subunit protein uL16

1

0

High-throughput

0.458

High

415027

ELP2
Elongator complex protein 2

1

0

High-throughput

0.458

High

415030

ALB1
Ribosome biogenesis protein ALB1

1

0

High-throughput

0.458

High

415032

RL38
Large ribosomal subunit protein eL38

1

0

High-throughput

0.458

High

415040

JJJ1
J protein JJJ1

1

0

High-throughput

0.458

High

415044

RL6A
Large ribosomal subunit protein eL6A

1

0

High-throughput

0.458

High

415045

NACB1
Nascent polypeptide-associated complex subunit beta-1

1

0

High-throughput

0.458

High

415050

RRP17
Ribosomal RNA-processing protein 17

1

0

High-throughput

0.458

High

415052

VMS1
tRNA endonuclease VMS1

1

0

High-throughput

0.458

High

415053

LTN1
E3 ubiquitin-protein ligase listerin

1

0

Small-scale

0.458

High

415054

RQC1
Ribosome quality control complex subunit 1

1

0

High-throughput

0.458

High

415057

NOC4
Nucleolar complex protein 4

1

0

High-throughput

0.458

High

394078

EF1A
Elongation factor 1-alpha

1

2

Small-scale

0.445

High

415039

NOG2
Nucleolar GTP-binding protein 2

1

1

Small-scale

0.437

High

415009

RPF2
Ribosome biogenesis protein RPF2

3

0

Small-scale

0.339

High

414986

SEC63
Protein translocation protein SEC63

1

0

Small-scale

0.251

Low

414989

DAP2
Dipeptidyl aminopeptidase B

1

0

Small-scale

0.249

Low

414994

KRR1
KRR1 small subunit processome component

1

0

High-throughput

0.249

Low

415001

TF2B
Transcription initiation factor IIB

1

0

High-throughput

0.249

Low

415007

PSG1
PMA1 stabilization in the Golgi protein 1 [Cleaved into: PSG1-N'; PSG1-C']

1

0

High-throughput

0.249

Low

415014

CIC1
Proteasome-interacting protein CIC1

1

0

High-throughput

0.249

Low

415020

NOC2
Nucleolar complex protein 2

1

0

Small-scale

0.249

Low

415024

DSN1
Kinetochore-associated protein DSN1

1

0

High-throughput

0.249

Low

415028

UTP10
U3 small nucleolar RNA-associated protein 10

1

0

High-throughput

0.249

Low

415041

SAM50
Sorting assembly machinery 50 kDa subunit

1

0

High-throughput

0.249

Low

415042

ORC1
Origin recognition complex subunit 1

1

0

High-throughput

0.249

Low

415051

DHR1
Probable ATP-dependent RNA helicase DHR1

1

0

High-throughput

0.249

Low

415055

MMS22
E3 ubiquitin-protein ligase substrate receptor MMS22

1

0

High-throughput

0.249

Low

415056

TFC6
Transcription factor tau 91 kDa subunit

1

0

High-throughput

0.249

Low

415059

YRA1
RNA annealing protein YRA1

1

0

High-throughput

0.249

Low

415058

NOP53
Ribosome biogenesis protein NOP53

1

0

Small-scale

0.232

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025